CX297679

Overview
NameCX297679
Unique NameCX297679
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.223e-12
Identity = 41/112 (36.61%), Postives = 57/112 (50.89%), Query Frame = 3
Query:    9 FLQALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPSSE------PGVTCKGVPNSVSI 326
            F++ + S LQ    +++++ LS HS DE YLG+R  P  W+ D    EAF  FS             N D   +NR G    PY LL P++        G+T KG+PNS+SI
Sbjct:  756 FIRTITSQLQTIIGISLIEVLSKHSSDEVYLGQRDTP-AWTSDARALEAFRRFSDRLVEIEGKVVGMNGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866          
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 43/111 (38.74%), Postives = 59/111 (53.15%), Query Frame = 3
Query:    9 FLQALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPSS-----EPGVTCKGVPNSVSI 326
            FL+ +   LQ    +++++ LS HS DE YLG+R  P  W+ D E  EAF  F              N+D   +NR G   +PY LL P++     E G+T KG+PNSVSI
Sbjct:  777 FLKTITPQLQTLLGISIIEILSMHSTDEIYLGQRDSP-NWTADDEPLEAFKRFGKELELIENNIIRRNNDKRFKNRTGPVNIPYTLLYPNTTDYTREGGITGKGIPNSVSI 886          
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 43/106 (40.57%), Postives = 57/106 (53.77%), Query Frame = 3
Query:    9 FLQALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 326
            FL+ + + LQ    +++V+ LS H+ DE YLG+R+ P  W+ D E   AF  F              N D    NR G    PY LL P+SE G+T KG+PNSVSI
Sbjct:  757 FLKTITAQLQTLLGVSLVEILSRHTTDEIYLGQRESPE-WTKDKEPLAAFDRFGKKLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFPTSEGGLTGKGIPNSVSI 861          
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 39/113 (34.51%), Postives = 59/113 (52.21%), Query Frame = 3
Query:    6 YFLQALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPSSE------PGVTCKGVPNSVSI 326
            +F++ + S  Q    +++++ LS HS DE YLG+R  P  W+ D +  EAF  FS             N DP  +NR G    PY L+ P++        G+T +G+PNS+SI
Sbjct:  752 FFIRTITSQFQTILGVSLIEILSKHSADEIYLGQRDTPE-WTSDPKALEAFKRFSRQLVEIESKVLNMNKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863          
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOX2_ORYSJ (Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12
Identity = 39/112 (34.82%), Postives = 59/112 (52.68%), Query Frame = 3
Query:    9 FLQALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPSSE------PGVTCKGVPNSVSI 326
            F++ +   +QA   +++++ LS HS DE YLG+R  P  W+ D +  EAF  F              N DP R+NR G    PY LL P++        G++ +G+PNS+SI
Sbjct:  760 FVRTITKQMQAIVGISLLEILSKHSSDEVYLGQRDTPE-WTSDAKALEAFKRFGARLTEIESRVVAMNKDPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870          
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.924e-12
Identity = 41/106 (38.68%), Postives = 57/106 (53.77%), Query Frame = 3
Query:    9 FLQALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 326
            FL+ + + LQ    +++++ LS H+ DE YLG+R+ P  W+ D E   AF  F              N +    NR G    PY LL P+SE G+T KG+PNSVSI
Sbjct:  756 FLKTITAQLQTLLGVSLIEILSRHTTDEIYLGQRESPE-WTKDKEPLAAFERFGNKLTDIEKQIMQRNGNNILTNRTGPVNAPYTLLFPTSEGGLTGKGIPNSVSI 860          
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.035e-11
Identity = 40/112 (35.71%), Postives = 57/112 (50.89%), Query Frame = 3
Query:    9 FLQALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPSSE------PGVTCKGVPNSVSI 326
            F+  + S +Q    +++++ LS HS DE YLG+R  P  W+ D +  E F  FS             N DP  +NR G    PY LL P++        G+T KG+PNS+SI
Sbjct:  752 FIHTITSQIQTIIGVSLLEVLSKHSSDELYLGQRDTPE-WTSDPKALEVFKRFSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862          
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOXA_PHAVU (Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 37/107 (34.58%), Postives = 60/107 (56.07%), Query Frame = 3
Query:    9 FLQALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPSSE-PGVTCKGVPNSVSI 326
            +L+ +   ++A   ++V++ LS H+ DE YLG+R  P  W+ + +  +AF  F              N D S RNR G   +PY +L+P+ E  G+T +G+PNS+SI
Sbjct:  757 YLRTITGKVEAIVDLSVIEILSRHASDEVYLGQRDNP-NWTNNIKALQAFKRFGQKLKEIEEKIMGRNKDSSLRNRNGPVKMPYTVLLPTCEDEGLTFRGIPNSISI 862          
The following BLAST results are available for this feature:
BLAST of CX297679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
LOX3_ORYSJ1.223e-1236.61Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]
LOX5_ARATH2.724e-1238.74Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOX1_SOLTU2.724e-1240.57Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOX1_ORYSJ2.724e-1234.51Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]
LOX2_ORYSJ3.557e-1234.82Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=... [more]
LOXA_SOLLC7.924e-1238.68Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX1_HORVU1.035e-1135.71Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]
LOXA_PHAVU8.761e-1134.58Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionC06004B01SK RindPdig24 Citrus clementina cDNA clone C06004B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297679 ID=CX297679; Name=CX297679; organism=Citrus clementina; type=EST; length=719bp
GAGGGTATTTCCTGCAGGCATTGCCAAGCGTACTCCAAGCGACCAAATAC
ATGGCCGTGGTAGACACATTGTCTACACATTCGCCGGACGAGGAGTACCT
CGGGGAACGACAACAGCCGTGGATTTGGTCCGGCGATGGTGAGATAACCG
AGGCATTTTTTGAATTTTCTGGGGAGATAAGACGGATAGAAAAAGAAATC
GAGAAAAGAAACAGTGATCCAAGCCGGAGGAACCGGTGCGGCGCCGGCGT
TTTACCATATGAGCTACTGGTACCGAGTTCGGAACCTGGAGTAACATGCA
AAGGTGTTCCAAATAGTGTATCAATATGAGCCCAAAGGGAGCTCACATGG
TCATGTTTGACCAACTTTGGTATATAACTTAAATATTAGATATTTGTAGT
CTGTAGAGATGCCGGCTATAAATGGTCATTATACCAATCAAATATTTTGT
ACCAAGCTAGATTCTAAGTAATTATGTGCCATTGAGAGCACATTAAACTT
AGAATTGTATATGCAATTGAGTATACAAGAATAATGTTTGTAGTTACCGT
ATCATATAATTCGTGGTGTAATAAGTAGACTTTTTCCTCGTGCCGAATTC
GGCACGAGGGTTCAGTACTCAACATCAAACAATCGATGCAGCAAAAGCCA
ACTGTGTGAATCTTCTGGAGTCAACAAGAAAGAACTAGAATCCCAGATGA
ATGAATTAGCTCTGAAGGA
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