CX297680

Overview
NameCX297680
Unique NameCX297680
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297680 vs. ExPASy Swiss-Prot
Match: GSTXC_TOBAC (Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.619e-26
Identity = 72/214 (33.64%), Postives = 114/214 (53.27%), Query Frame = 3
Query:   99 KEVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWEQN--PLLPRDPYQRAMARFWAKYSEELMAKAFMAL-VLXXXXXXXXXXXXXXGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARDQMLVY 731
            +EV LL FW S F  R+++AL +K +  YEY +ED+ NKSP LL++NP++KK+PV IH  K + ES+I +EYI+E W+     LLP DPY RA ARFWA Y ++ +      L                  L+ +EG    +    +  GES  G++++A      W   +E  G+F      + P    W+ + +    + ++LP + ++L +
Sbjct:    4 EEVILLDFWPSMFGMRLRIALAEKEI-KYEYKQEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIAVEYIEEVWKDKAPSLLPSDPYDRAQARFWADYIDKKLYDFGRKLWATKGEEQEAAKKDFIECLKVLEGALGDRP---YFGGES-FGFVDIALIGFYSWFYAYETFGNFST--EAECPKFVAWAKRCMQRESVAKSLPDQPKVLEF 210          
BLAST of CX297680 vs. ExPASy Swiss-Prot
Match: GSTX1_NICPL (Probable glutathione S-transferase MSR-1 OS=Nicotiana plumbaginifolia GN=MSR-1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.938e-25
Identity = 69/179 (38.55%), Postives = 98/179 (54.75%), Query Frame = 3
Query:   96 AKEVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETW-EQNPLLPRDPYQRAMARFWAKYSEELMAKAFMALVLXXXXXXXXXXXXXXGLEK-IEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQV 626
            +  V LL F  S F  R+++AL  KG+  YE  EE++ +KSP LLE+NPV+KK+P+ IH  K + ESL ILEYIDE W E+ PLLP DPYQR+ ARFWA Y +  +      +                 + K +EGE   K+      G  N+G++++A      W   +E   +F +
Sbjct:    3 SNNVVLLDFSGSSFGMRLRIALALKGI-KYEAKEENLSDKSPLLLEMNPVHKKIPILIHNGKPICESLNILEYIDEVWHEKCPLLPSDPYQRSQARFWANYIDNKIYSTGRRVWSGKGEDQEEAKKEFIEIFKTLEGELGNKTYF----GGDNLGFVDVALVPFTSWFYSYETCANFSI 176          
BLAST of CX297680 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSJ (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. japonica GN=GSTU1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.139e-21
Identity = 69/217 (31.80%), Postives = 109/217 (50.23%), Query Frame = 3
Query:   99 KEVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWEQNP-LLP-------RDPYQRAMARFWAKYSEELMAKAFMAL-VLXXXXXXXXXXXXXXGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARDQM 722
            KE+ LL FW SPF  R ++A+ +KG+ ++EY EED+ NKS  LL  NPV++K+PV +H  + V+ESL+IL+Y+D+ +   P LLP          Y RA ARFWA Y +  +      L  L               L  +E E  G        G   +G++++A      W   +E  G F V   +  P +  W+ +      + ++LP+ +++
Sbjct:    5 KELVLLDFWVSPFGQRCRIAMAEKGL-EFEYREEDLGNKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYLDDAFPGTPHLLPPANSGDADAAYARATARFWADYVDRKLYDCGSRLWRLKGEPQAAAGREMAEILRTLEAEL-GDREFFGGGGGGRLGFVDVALVPFTAWFYSYERCGGFSV--EEVAPRLAAWARRCGRIDSVVKHLPSPEKV 217          
BLAST of CX297680 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSI (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. indica GN=GSTU1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.487e-21
Identity = 68/217 (31.34%), Postives = 109/217 (50.23%), Query Frame = 3
Query:   99 KEVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWEQNP--LLPRD------PYQRAMARFWAKYSEELMAKAFMAL-VLXXXXXXXXXXXXXXGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARDQM 722
            KE+ LL FW SPF  R ++A+ +KG+ ++EY EED+ NKS  LL  NPV++K+PV +H  + V+ESL+IL+Y+D+ +   P  L P +       Y RA ARFWA Y +  +      L  L               L  +E E  G        G   +G++++A      W   +E  G F V   +  P +  W+ +      + ++LP+ +++
Sbjct:    5 KELVLLDFWVSPFGQRCRIAMAEKGL-EFEYREEDLGNKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYLDDAFPGTPHLLSPANSGDADAAYARATARFWADYVDRKLYDCGSRLWRLKGEPQAAAGREMAEILRTLEAEL-GDREFFGGGGGGRLGFVDVALVPFTAWFYSYERCGGFSV--EEVAPRLAAWARRCGRIDSVAKHLPSPEKV 217          
BLAST of CX297680 vs. ExPASy Swiss-Prot
Match: GSTX2_MAIZE (Probable glutathione S-transferase BZ2 OS=Zea mays GN=BZ2 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.650e-21
Identity = 70/220 (31.82%), Postives = 110/220 (50.00%), Query Frame = 3
Query:  111 LLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF-NKSPRLLELNPVYKKVPVFIHGE-KVVNESLIILEYIDETWEQNP-------LLPRDPYQRAMARFWAKYSEELMAKAFMALVLXXXXXXXXXXXXXX--GLEKIEGEFKGKSG--LLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARDQMLVY 731
            +LG   SPF  R ++AL  +GV  YE ++E +   KS RLL  NPVY K+PV +  + + + ES +I++YI++   ++        LLP DPY+RAM RFW  + ++    A  A+ L                 L  +E  FK +S     F+ G++  G L+LA G  L  L   E      ++D    P++  WS +F  HP  K  LP  ++++ +
Sbjct:    3 VLGGEVSPFTARARLALDLRGVA-YELLDEPLGPKKSDRLLAANPVYGKIPVLLLPDGRAICESAVIVQYIEDVARESGGAEAGSLLLPDDPYERAMHRFWTAFIDDKFWPALDAVSLAPTPGARAQAAEDTRAALSLLEEAFKDRSNGRAFFSGGDAAPGLLDLALGCFLPALRACERLHGLSLIDASATPLLDGWSQRFAAHPAAKRVLPDTEKVVQF 221          
BLAST of CX297680 vs. ExPASy Swiss-Prot
Match: MAAI_CAEEL (Probable maleylacetoacetate isomerase OS=Caenorhabditis elegans GN=gst-42 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 3
Query:  111 LLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPR--LLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWEQNPLLPRDPYQRAMAR 380
            L  +W S   +RV++AL  K V DYEY   D+ ++  +  L E+NP   KVP F+   +V+ ESL I+EY++ET    PLLP+DP +RA AR
Sbjct:    8 LYSYWRSSCSWRVRIALALKNV-DYEYKTVDLLSEEAKSKLKEINPA-AKVPTFVVDGQVITESLAIIEYLEETHPDVPLLPKDPIKRAHAR 97          
BLAST of CX297680 vs. ExPASy Swiss-Prot
Match: GSTZ1_DIACA (Glutathione S-transferase 1 OS=Dianthus caryophyllus GN=GST1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 38/95 (40.00%), Postives = 63/95 (66.32%), Query Frame = 3
Query:   99 KEVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF---NKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWEQNPLLPRDPYQRAM 374
            +++ L  F  S   +RV++AL  KG+ D+EY   D+F   + +P  L+LNP+   VPV +HG+ V+ +SL I+ Y++E + +NPLLP+D  +RA+
Sbjct:    7 QKMQLYSFSLSSCAWRVRIALHLKGL-DFEYKAVDLFKGEHLTPEFLKLNPL-GYVPVLVHGDIVIADSLAIIMYLEEKFPENPLLPQDLQKRAL 99          
The following BLAST results are available for this feature:
BLAST of CX297680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GSTXC_TOBAC2.619e-2633.64Probable glutathione S-transferase parC OS=Nicotia... [more]
GSTX1_NICPL4.938e-2538.55Probable glutathione S-transferase MSR-1 OS=Nicoti... [more]
GSTU1_ORYSJ1.139e-2131.80Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]
GSTU1_ORYSI1.487e-2131.34Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]
GSTX2_MAIZE5.650e-2131.82Probable glutathione S-transferase BZ2 OS=Zea mays... [more]
MAAI_CAEEL2.811e-1244.57Probable maleylacetoacetate isomerase OS=Caenorhab... [more]
GSTZ1_DIACA3.108e-1140.00Glutathione S-transferase 1 OS=Dianthus caryophyll... [more]

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Properties
Property NameValue
Genbank descriptionC06004B02SK RindPdig24 Citrus clementina cDNA clone C06004B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297680 ID=CX297680; Name=CX297680; organism=Citrus clementina; type=EST; length=732bp
CACAGAATATCATCTCATCATCACCACCACAAGAAATAAATCATCTCATC
ACAAAGCATTACAGAGATCAATTAACTATCAGCGAAAATAATATGGCCAA
AGAAGTGACGCTTTTGGGGTTTTGGGCAAGTCCATTTGTGTTCAGGGTAA
AAGTCGCTCTGCAGCAGAAGGGTGTTGTTGATTATGAATACATTGAAGAA
GACATCTTTAACAAGAGCCCCAGGCTCTTGGAACTGAACCCAGTTTATAA
GAAGGTTCCTGTGTTCATCCATGGCGAGAAAGTGGTCAATGAATCGTTGA
TTATTCTTGAGTACATCGATGAGACATGGGAGCAAAATCCTTTGTTGCCT
CGAGACCCTTACCAAAGAGCCATGGCTCGTTTCTGGGCTAAATATTCAGA
AGAACTGATGGCGAAAGCATTTATGGCTCTGGTTTTGAAAGGAGAGGCAA
AGGAGAAAAATGCGAAAGAATTTGCAGAAGGATTGGAGAAGATAGAAGGG
GAATTCAAGGGAAAGAGCGGCTTATTGTTTGCTGAAGGAGAGAGCAATAT
TGGGTATTTGGAACTTGCATTTGGTTGGATTCTTTACTGGCTGCCTGTTT
GGGAAGAAGCTGGATCCTTTCAAGTTCTTGACCCTCAGAAATTTCCAGTC
ATCACTGAATGGAGCACCAAGTTTGTGAATCACCCTCTCATCAAAGAAAA
CTTGCCGGCCAGGGACCAGATGCTCGTCTATT
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