CX297681

Overview
NameCX297681
Unique NameCX297681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length760
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297681 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLFF (Chaperone protein dnaJ OS=Chlamydophila felis (strain Fe/C-56) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.349e-11
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 2
Query:  245 FYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNTRALYDNHLATGSF 460
            +YD+LG+ ++ +P EIK+AY+ L +KYHPD +P +   E  KRF  + EAYE LSD   R  YD +   G F
Sbjct:    3 YYDVLGVSKTASPEEIKKAYRKLAVKYHPDKNPGDA--EAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPF 72          
BLAST of CX297681 vs. ExPASy Swiss-Prot
Match: DNJB9_HUMAN (DnaJ homolog subfamily B member 9 OS=Homo sapiens GN=DNAJB9 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.373e-11
Identity = 49/143 (34.27%), Postives = 73/143 (51.05%), Query Frame = 2
Query:  224 LSAATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNTRALYD--NHLA-------TGSFIAFSSRKPSRYKEGLDDYGTWRIRWQSQLTELKRRSMNKDSRDHMSWGSRIRRRH 625
            L  A++S+YD+LG+P+S + R+IK+A+  L +KYHPD     +  +   +F  + EAYETLSD N R  YD   H A        GS  +F       + +   D+G +    Q+Q T  K+R  N   +     GS  +R H
Sbjct:   20 LILASKSYYDILGVPKSASERQIKKAFHKLAMKYHPD---KNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSGKGQRGSGSSFEQSFNFNFDDLFKDFGFF---GQNQNTGSKKRFEN-HFQTRQDGGSSRQRHH 155          
BLAST of CX297681 vs. ExPASy Swiss-Prot
Match: DNAJ_EHRRW (Chaperone protein dnaJ OS=Ehrlichia ruminantium (strain Welgevonden) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.373e-11
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 2
Query:  245 FYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNTRALYDNH 442
            +YDLLG+ ++ TP EIK+AY+ + LKYHPD +P ++  E  ++F  L EAY+ L D + RA YD +
Sbjct:    6 YYDLLGLSKNATPEEIKKAYRKMALKYHPDKNPGDKAAE--EKFKELSEAYDVLIDKDKRAAYDRY 69          
BLAST of CX297681 vs. ExPASy Swiss-Prot
Match: DNAJ_EHRRG (Chaperone protein dnaJ OS=Ehrlichia ruminantium (strain Gardel) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.373e-11
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 2
Query:  245 FYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNTRALYDNH 442
            +YDLLG+ ++ TP EIK+AY+ + LKYHPD +P ++  E  ++F  L EAY+ L D + RA YD +
Sbjct:    6 YYDLLGLSKNATPEEIKKAYRKMALKYHPDKNPGDKAAE--EKFKELSEAYDVLIDKDKRAAYDRY 69          
BLAST of CX297681 vs. ExPASy Swiss-Prot
Match: DNJB6_XENTR (DnaJ homolog subfamily B member 6 OS=Xenopus tropicalis GN=dnajb6 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.712e-11
Identity = 30/66 (45.45%), Postives = 46/66 (69.70%), Query Frame = 2
Query:  245 FYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNTRALYDNH 442
            +YD+LG+ ++ +P +IK+AY+ L LK+HPD +P  + DE  +RF  + EAYE LSD   R +YD +
Sbjct:    4 YYDVLGVQRNASPEDIKKAYRKLALKWHPDKNPDNK-DEAERRFKEVAEAYEVLSDSKKRDIYDKY 68          
BLAST of CX297681 vs. ExPASy Swiss-Prot
Match: DNAJ_LACF3 (Chaperone protein dnaJ OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.712e-11
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 2
Query:  233 ATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNTRALYDNHLATGS 457
            A E  YD+LG+ +  +  EIK+AY+ L  KYHPDV+     +   K+F ++ EAYETLSD   RA YD    TGS
Sbjct:    2 AEEDLYDVLGVKKDASEAEIKRAYRKLAAKYHPDVNHEPGAE---KKFKKINEAYETLSDDQKRAQYDQFGTTGS 73          
BLAST of CX297681 vs. ExPASy Swiss-Prot
Match: DNAJ2_AQUAE (Chaperone protein dnaJ 2 OS=Aquifex aeolicus GN=dnaJ2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.712e-11
Identity = 30/70 (42.86%), Postives = 46/70 (65.71%), Query Frame = 2
Query:  227 SAATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNTRALYD 436
            S+  + +Y++LG+P++ +  EIK+AY+ LV KYHPD+      +E   +F  + EAY+ LSDP  R LYD
Sbjct:    3 SSTKKDYYEILGVPRNASQEEIKKAYRRLVRKYHPDICKKPECEE---KFKEINEAYQVLSDPEKRKLYD 69          
BLAST of CX297681 vs. ExPASy Swiss-Prot
Match: DNJB9_MOUSE (DnaJ homolog subfamily B member 9 OS=Mus musculus GN=Dnajb9 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.460e-11
Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = 2
Query:  224 LSAATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNTRALYDNHLATGSFIAFSSRKPSR 490
            L  A++S+YD+LG+P+S + R+IK+A+  L +KYHPD     +  +   +F  + EAYETLSD N+R  YD    T    AF++ K  R
Sbjct:   20 LILASKSYYDILGVPKSASERQIKKAFHKLAMKYHPD---KNKSPDAEAKFREIAEAYETLSDANSRKEYD----TIGHSAFTNGKGQR 101          
BLAST of CX297681 vs. ExPASy Swiss-Prot
Match: DNAJ_THEAB (Chaperone protein dnaJ OS=Thermosipho africanus (strain TCF52B) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.460e-11
Identity = 31/68 (45.59%), Postives = 47/68 (69.12%), Query Frame = 2
Query:  233 ATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNTRALYD 436
            A + +Y++LG+ ++ +  EI+QAYK L+ K+HPD +   R  E  ++F  +QEAYE LSDP  RA+YD
Sbjct:    2 AKKDYYEILGVSRNASQEEIRQAYKQLIKKWHPDRNHQNR-KEAEEKFKEIQEAYEVLSDPEKRAMYD 68          
BLAST of CX297681 vs. ExPASy Swiss-Prot
Match: DNAJ2_THET8 (Chaperone protein dnaJ 2 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=dnaJ2 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.460e-11
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 2
Query:  230 AATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNTRALYDNHLAT 451
            AA + +Y +LG+P++ T  EIK+AYK L  +YHPDV+     +E   +F  + EAY  LSDP  R +YD +  T
Sbjct:    2 AAKKDYYAILGVPRNATQEEIKRAYKRLARQYHPDVNKSPEAEE---KFKEINEAYAVLSDPEKRRIYDTYGTT 72          
The following BLAST results are available for this feature:
BLAST of CX297681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
DNAJ_CHLFF3.349e-1145.83Chaperone protein dnaJ OS=Chlamydophila felis (str... [more]
DNJB9_HUMAN4.373e-1134.27DnaJ homolog subfamily B member 9 OS=Homo sapiens ... [more]
DNAJ_EHRRW4.373e-1146.97Chaperone protein dnaJ OS=Ehrlichia ruminantium (s... [more]
DNAJ_EHRRG4.373e-1146.97Chaperone protein dnaJ OS=Ehrlichia ruminantium (s... [more]
DNJB6_XENTR5.712e-1145.45DnaJ homolog subfamily B member 6 OS=Xenopus tropi... [more]
DNAJ_LACF35.712e-1146.67Chaperone protein dnaJ OS=Lactobacillus fermentum ... [more]
DNAJ2_AQUAE5.712e-1142.86Chaperone protein dnaJ 2 OS=Aquifex aeolicus GN=dn... [more]
DNJB9_MOUSE7.460e-1141.57DnaJ homolog subfamily B member 9 OS=Mus musculus ... [more]
DNAJ_THEAB7.460e-1145.59Chaperone protein dnaJ OS=Thermosipho africanus (s... [more]
DNAJ2_THET87.460e-1143.24Chaperone protein dnaJ 2 OS=Thermus thermophilus (... [more]

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Properties
Property NameValue
Genbank descriptionC06004B03SK RindPdig24 Citrus clementina cDNA clone C06004B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297681 ID=CX297681; Name=CX297681; organism=Citrus clementina; type=EST; length=760bp
AGCGCATCACTCAGAAGCAAAAATGAGTCACGGAATAGTCTCACCTGCAG
CCCAATCAAATTTCCTAAACCACTCCAAATCCAGCATCCCAATCGCGAGC
TCCATGCTTGCCGAAGCTTCTTCTTGTCTCAGCTTCAATCCCCATCTCCC
AAAACTAAGCTTTTCTCTGAAAACTCAATCTGGGTCCTTGAGAAGAGGAC
CAATCAAGGCCTCTGCTCAGAGCTTGTCTGCCGCAACAGAGAGTTTCTAT
GACTTGTTGGGCATTCCTCAAAGCGTGACGCCGAGAGAAATCAAGCAAGC
TTACAAGCACCTTGTGCTGAAATATCATCCTGACGTGTCACCTCCAGAAC
GCATAGACGAGAACACTAAGAGGTTCATTCGGTTACAAGAAGCTTACGAG
ACCTTGTCTGATCCCAATACAAGAGCTTTATATGACAATCATTTGGCCAC
CGGTTCATTTATAGCTTTTTCATCTAGGAAACCGTCCCGTTACAAGGAGG
GTCTGGATGATTACGGGACTTGGAGGATCCGATGGCAGTCTCAACTGACA
GAGCTGAAGAGAAGGAGCATGAATAAGGATTCAAGGGACCATATGTCGTG
GGGATCTAGAATCCGCCGGCGCCATAGAAGCAAAACAACAGCTGATGATA
TTGACAGAAACTCGACTATAAAAGTTTGATGTTACAATTAGCTCATCTCG
TATTACAGTATAGCTAGCTAGAAGAATATGCTCATTATGTGTACATTATT
AATTTGAATG
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