CX297681

Overview
NameCX297681
Unique NameCX297681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length760
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX297681 vs. ExPASy Swiss-Prot
Match: DNJA4_MOUSE (DnaJ homolog subfamily A member 4 OS=Mus musculus GN=Dnaja4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11
Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 2 
Query:  245 FYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNTRALYD 436
            +YD+LG+  S +P EIK+AY+ L LKYHPD +P E      ++F  + +AYE LSDP  R +YD
Sbjct:    7 YYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDE-----GEKFKLISQAYEVLSDPKKRDIYD 65
[Close]
BLAST of CX297681 vs. ExPASy Swiss-Prot
Match: DNAJ_PROMH (Chaperone protein dnaJ OS=Proteus mirabilis (strain HI4320) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11
Identity = 31/70 (44.29%), Postives = 47/70 (67.14%), Query Frame = 2 
Query:  233 ATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNTRALYDNH 442
            A   FY++LG+ ++   +EIK+AYK L +KYHPD +  ++  E+  +F  ++EAYE LSDP  RA YD +
Sbjct:    2 AKRDFYEVLGLSKTADEKEIKRAYKRLAMKYHPDRNQGDKDSES--KFKEIKEAYEVLSDPQKRAAYDQY 69
[Close]
BLAST of CX297681 vs. ExPASy Swiss-Prot
Match: DNAJ_CALS8 (Chaperone protein dnaJ OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 2 
Query:  230 AATESFYDLLGIPQSVTPREIKQAYKHLVLKYHPDVSPPERIDENTKRFIRLQEAYETLSDPNTRALYD 436
            A  + +Y++LG+P++ T  EIK+AY+ L  +YHPD +P  +  E  ++F  + EAYE LSDP  R  YD
Sbjct:    2 AQKKDYYEILGVPRNATQEEIKRAYRRLAKQYHPDANPGNK--EAEEKFKEINEAYEVLSDPEKRRKYD 68
The following BLAST results are available for this feature:
BLAST of CX297681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
DNJA4_MOUSE9.743e-1148.44DnaJ homolog subfamily A member 4 OS=Mus musculus ... [more]
DNAJ_PROMH9.743e-1144.29Chaperone protein dnaJ OS=Proteus mirabilis (strai... [more]
DNAJ_CALS89.743e-1143.48Chaperone protein dnaJ OS=Caldicellulosiruptor sac... [more]

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Properties
Property NameValue
Genbank descriptionC06004B03SK RindPdig24 Citrus clementina cDNA clone C06004B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297681 ID=CX297681; Name=CX297681; organism=Citrus clementina; type=EST; length=760bp
AGCGCATCACTCAGAAGCAAAAATGAGTCACGGAATAGTCTCACCTGCAG
CCCAATCAAATTTCCTAAACCACTCCAAATCCAGCATCCCAATCGCGAGC
TCCATGCTTGCCGAAGCTTCTTCTTGTCTCAGCTTCAATCCCCATCTCCC
AAAACTAAGCTTTTCTCTGAAAACTCAATCTGGGTCCTTGAGAAGAGGAC
CAATCAAGGCCTCTGCTCAGAGCTTGTCTGCCGCAACAGAGAGTTTCTAT
GACTTGTTGGGCATTCCTCAAAGCGTGACGCCGAGAGAAATCAAGCAAGC
TTACAAGCACCTTGTGCTGAAATATCATCCTGACGTGTCACCTCCAGAAC
GCATAGACGAGAACACTAAGAGGTTCATTCGGTTACAAGAAGCTTACGAG
ACCTTGTCTGATCCCAATACAAGAGCTTTATATGACAATCATTTGGCCAC
CGGTTCATTTATAGCTTTTTCATCTAGGAAACCGTCCCGTTACAAGGAGG
GTCTGGATGATTACGGGACTTGGAGGATCCGATGGCAGTCTCAACTGACA
GAGCTGAAGAGAAGGAGCATGAATAAGGATTCAAGGGACCATATGTCGTG
GGGATCTAGAATCCGCCGGCGCCATAGAAGCAAAACAACAGCTGATGATA
TTGACAGAAACTCGACTATAAAAGTTTGATGTTACAATTAGCTCATCTCG
TATTACAGTATAGCTAGCTAGAAGAATATGCTCATTATGTGTACATTATT
AATTTGAATG
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