CX297687

Overview
NameCX297687
Unique NameCX297687
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX5_MOUSE (Epididymal secretory glutathione peroxidase OS=Mus musculus GN=Gpx5 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.421e-12
Identity = 50/137 (36.50%), Postives = 65/137 (47.45%), Query Frame = 2
Query:   11 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN-EQIQEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLK---------------SSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            Y EL+ L +  K  GL IL FPCNQFG QEPGDN E +      R    F   F +F K DVNG+N   ++  LK               +S   +    I+WNF KFLV  +G  V R+       +++ DI   L
Sbjct:   79 YPELNALQEDLKPFGLVILGFPCNQFGKQEPGDNLEILPGLKYVRPGKGFLPNFQLFAKGDVNGENEQKIFTFLKRSCPHPSETVVMSKHTSWEPIKVHDIRWNFEKFLVGPDGVPVMRWFHQAPVSTVKSDIMAYL 215          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPXC_DIRIM (Glutathione peroxidase OS=Dirofilaria immitis PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.129e-12
Identity = 45/127 (35.43%), Postives = 62/127 (48.82%), Query Frame = 2
Query:    5 FNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ-------IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKS---SKGGLFGD------------SIKWNFSKFLVDKEGNVVERYAPT 319
            F Y + + + +   N  L+ILAFPCNQF  QEP +N +       ++            IF KV+VNGD+  PLYK LK        + GD             I WNF KFL+DK+G+   R+ P+
Sbjct:   76 FQYNDFNPMLENNSNGTLKILAFPCNQFLLQEPAENHELLNGLKYVRPGNGWEPHGNMHIFGKVEVNGDDHHPLYKFLKEHCPQTVPIIGDRHQLMYNPIGTNDIIWNFEKFLIDKKGHPRYRFHPS 202          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX2_CALJA (Glutathione peroxidase 2 OS=Callithrix jacchus GN=GPX2 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 9.198e-12
Identity = 45/142 (31.69%), Postives = 69/142 (48.59%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            ++T+L++L  ++  + L +L FPC+QFG QE   NE+I       R    ++  F +  K +VNG N  P++ +LK        D                    + WNF KFL+  EG    RY+ T   ++IE DIK+LL
Sbjct:   46 DFTQLNELQCRFPRR-LVVLGFPCHQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPHDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLL 186          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX5_CANFA (Epididymal secretory glutathione peroxidase OS=Canis familiaris GN=GPX5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.569e-11
Identity = 46/133 (34.59%), Postives = 66/133 (49.62%), Query Frame = 2
Query:   11 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGD------------SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 349
            Y EL+ L ++ K  GL +L FPCNQFG Q PG+N +I       R    +   F +F+K DVNG+    ++  LK S      + G              I+WNF KFLV  +G  V R+   T   ++++DI
Sbjct:   79 YPELNSLQEELKPLGLVVLGFPCNQFGKQGPGENSEILPGLKYVRPGRGYVPNFQLFEKGDVNGEKEQKVFTFLKLSCPHPSEVLGSFRHISWDPVKVHDIRWNFEKFLVGPDGVPVLRWFHRTPISTVKEDI 211          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX2_MACFU (Glutathione peroxidase 2 OS=Macaca fuscata fuscata GN=GPX2 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.049e-11
Identity = 45/143 (31.47%), Postives = 69/143 (48.25%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 364
            ++T+L++L  ++  + L +L FPCNQFG QE   NE+I       R    ++  F +  K +VNG N  P++ +LK        D                    + WNF KFL+  E     RY+ T   ++IE DIK+LL+
Sbjct:   46 DFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPHDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEVEPFRRYSRTFPTINIEPDIKRLLK 187          
The following BLAST results are available for this feature:
BLAST of CX297687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
GPX5_MOUSE2.421e-1236.50Epididymal secretory glutathione peroxidase OS=Mus... [more]
GPXC_DIRIM4.129e-1235.43Glutathione peroxidase OS=Dirofilaria immitis PE=2... [more]
GPX2_CALJA9.198e-1231.69Glutathione peroxidase 2 OS=Callithrix jacchus GN=... [more]
GPX5_CANFA1.569e-1134.59Epididymal secretory glutathione peroxidase OS=Can... [more]
GPX2_MACFU2.049e-1131.47Glutathione peroxidase 2 OS=Macaca fuscata fuscata... [more]

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Properties
Property NameValue
Genbank descriptionC06004B09SK RindPdig24 Citrus clementina cDNA clone C06004B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297687 ID=CX297687; Name=CX297687; organism=Citrus clementina; type=EST; length=587bp
GAGGTTCAACTACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGAATC
AAGGCTTGGAGATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAAGAG
CCAGGAGACAATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAAGGC
TGAGTTTCCCATATTTGATAAGGTTGATGTTAATGGTGATAATGCTGCTC
CTTTATACAAGCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGACAGC
ATCAAGTGGAACTTTTCCAAGTTCTTGGTGGATAAGGAGGGGAATGTTGT
TGAGCGTTATGCCCCCACCACTAGCCCTCTGAGCATTGAGAAGGATATAA
AGAAACTTCTGGAGACTGCTTAACCGCTGCTACAACTTGCATGATCAGCT
TCTTGCTAATAAAACTAGAGTATCATGCTGTAGAAGCACTCTGGTGGAAA
TATATGTTTAGCTTTGTCTCAATATCTGTAGACATATAATGAAGTTTCCT
AATGTCGAAGTAAATTCAGTTGATAAGTGCTTGGTTTGTATGTAATGAAT
GTTCCCAGTTTTTGTAATTCAAAATAAAAGGTGCTTG
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