CX297687

Overview
NameCX297687
Unique NameCX297687
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: BSAA_BACHD (Glutathione peroxidase homolog bsaA OS=Bacillus halodurans GN=bsaA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.905e-33
Identity = 65/117 (55.56%), Postives = 86/117 (73.50%), Query Frame = 2
Query:   11 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            Y EL  LY+ YK+QG  +L FP NQF  QEPGD+ +I  F    +   FPIF+KV VNG  A PL+++L S +GGLF + IKWNF+KFL+D+ GNVV+RYAP+TSP+ I+ DI++LL
Sbjct:   41 YEELQILYETYKDQGFTVLGFPSNQFMNQEPGDHNEIAAFCERNYGVSFPIFEKVKVNGKEAHPLFQYLTSQQGGLFTEKIKWNFTKFLIDRSGNVVKRYAPSTSPIKIKDDIEELL 157          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPO_LACLA (Glutathione peroxidase OS=Lactococcus lactis subsp. lactis GN=gpo PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.045e-31
Identity = 61/114 (53.51%), Postives = 81/114 (71.05%), Query Frame = 2
Query:   20 LSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            L +LY+ YK+QGLEIL FPCNQF  Q+ G+N +I EF    +   FP+F K+ VNG  A PLY+ LK    G    +IKWNF+KFL+D+EGNV+ER+AP T P  +E++I+KLL
Sbjct:   44 LEKLYENYKDQGLEILGFPCNQFVNQDAGENSEINEFCQLNYGVTFPMFQKIKVNGKEAHPLYQFLKKEAKGALSGTIKWNFTKFLIDREGNVIERFAPKTEPKEMEEEIQKLL 157          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: BSAA_BACSU (Glutathione peroxidase homolog bsaA OS=Bacillus subtilis GN=bsaA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.365e-31
Identity = 64/117 (54.70%), Postives = 82/117 (70.09%), Query Frame = 2
Query:   17 ELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFG-DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 364
            +L +LYD Y+ +GLEIL FPCNQF  QEPG+   IQEF  T +   FP+F KVDVNG NA PL+ +L     G+ G  +IKWNF+KF+VD+ G +V RY+P T+P  +E DI KLLE
Sbjct:   43 QLQELYDTYQQEGLEILGFPCNQFMNQEPGEEADIQEFCETNYGVTFPMFSKVDVNGKNAHPLFVYLTEHAKGMLGTKAIKWNFTKFIVDRNGEIVGRYSPNTNPKELEDDIVKLLE 159          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX2_YEAST (Glutathione peroxidase 2 OS=Saccharomyces cerevisiae GN=GPX2 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.783e-31
Identity = 64/118 (54.24%), Postives = 81/118 (68.64%), Query Frame = 2
Query:   11 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFG-DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            Y EL +LY KY+++G  IL FPCNQFG QEPG +EQI EF    +   FPI  K+DVNG NA  +Y +LKS K GL G   IKWNF KFLVD  G VV+R++  T P S++++I+ LL
Sbjct:   43 YKELEELYKKYQDKGFVILGFPCNQFGKQEPGSDEQITEFCQLNYGVTFPIMKKIDVNGSNADSVYNYLKSQKAGLLGFKGIKWNFEKFLVDSNGKVVQRFSSLTKPSSLDQEIQSLL 160          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX3_YEAST (Peroxiredoxin HYR1 OS=Saccharomyces cerevisiae GN=HYR1 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.971e-31
Identity = 63/119 (52.94%), Postives = 81/119 (68.07%), Query Frame = 2
Query:   11 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFG-DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 364
            Y EL  LY +YK++G  I+ FPCNQFG QEPG +E+I +F    +   FPI  K+DVNG N  P+YK LKS K G+ G   IKWNF KFLVDK+G V ERY+  T P S+ + I++LL+
Sbjct:   42 YKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELLK 160          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: BSAA_STAAW (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain MW2) GN=bsaA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.187e-31
Identity = 58/114 (50.88%), Postives = 82/114 (71.93%), Query Frame = 2
Query:   20 LSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            L  LY+KYK+QG  IL FPCNQFG QEPG  E+  +     +   FP+  K+DV G++  PL+++L +++ G F + IKWNF+KFLVD+EGNVV+R+AP   P+ IE++I+KLL
Sbjct:   45 LQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKLL 158          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: BSAA_STAAS (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain MSSA476) GN=bsaA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.187e-31
Identity = 58/114 (50.88%), Postives = 82/114 (71.93%), Query Frame = 2
Query:   20 LSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            L  LY+KYK+QG  IL FPCNQFG QEPG  E+  +     +   FP+  K+DV G++  PL+++L +++ G F + IKWNF+KFLVD+EGNVV+R+AP   P+ IE++I+KLL
Sbjct:   45 LQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKLL 158          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: BSAA_STAAR (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain MRSA252) GN=bsaA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.187e-31
Identity = 58/114 (50.88%), Postives = 82/114 (71.93%), Query Frame = 2
Query:   20 LSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            L  LY+KYK+QG  IL FPCNQFG QEPG  E+  +     +   FP+  K+DV G++  PL+++L +++ G F + IKWNF+KFLVD+EGNVV+R+AP   P+ IE++I+KLL
Sbjct:   45 LQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKLL 158          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: BSAA_STAAN (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain N315) GN=bsaA PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.187e-31
Identity = 58/114 (50.88%), Postives = 82/114 (71.93%), Query Frame = 2
Query:   20 LSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            L  LY+KYK+QG  IL FPCNQFG QEPG  E+  +     +   FP+  K+DV G++  PL+++L +++ G F + IKWNF+KFLVD+EGNVV+R+AP   P+ IE++I+KLL
Sbjct:   45 LQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKLL 158          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: BSAA_STAAM (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=bsaA PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.187e-31
Identity = 58/114 (50.88%), Postives = 82/114 (71.93%), Query Frame = 2
Query:   20 LSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            L  LY+KYK+QG  IL FPCNQFG QEPG  E+  +     +   FP+  K+DV G++  PL+++L +++ G F + IKWNF+KFLVD+EGNVV+R+AP   P+ IE++I+KLL
Sbjct:   45 LQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKLL 158          
The following BLAST results are available for this feature:
BLAST of CX297687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
BSAA_BACHD1.905e-3355.56Glutathione peroxidase homolog bsaA OS=Bacillus ha... [more]
GPO_LACLA1.045e-3153.51Glutathione peroxidase OS=Lactococcus lactis subsp... [more]
BSAA_BACSU1.365e-3154.70Glutathione peroxidase homolog bsaA OS=Bacillus su... [more]
GPX2_YEAST1.783e-3154.24Glutathione peroxidase 2 OS=Saccharomyces cerevisi... [more]
GPX3_YEAST3.971e-3152.94Peroxiredoxin HYR1 OS=Saccharomyces cerevisiae GN=... [more]
BSAA_STAAW5.187e-3150.88Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAS5.187e-3150.88Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAR5.187e-3150.88Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAN5.187e-3150.88Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAM5.187e-3150.88Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]

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Properties
Property NameValue
Genbank descriptionC06004B09SK RindPdig24 Citrus clementina cDNA clone C06004B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297687 ID=CX297687; Name=CX297687; organism=Citrus clementina; type=EST; length=587bp
GAGGTTCAACTACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGAATC
AAGGCTTGGAGATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAAGAG
CCAGGAGACAATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAAGGC
TGAGTTTCCCATATTTGATAAGGTTGATGTTAATGGTGATAATGCTGCTC
CTTTATACAAGCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGACAGC
ATCAAGTGGAACTTTTCCAAGTTCTTGGTGGATAAGGAGGGGAATGTTGT
TGAGCGTTATGCCCCCACCACTAGCCCTCTGAGCATTGAGAAGGATATAA
AGAAACTTCTGGAGACTGCTTAACCGCTGCTACAACTTGCATGATCAGCT
TCTTGCTAATAAAACTAGAGTATCATGCTGTAGAAGCACTCTGGTGGAAA
TATATGTTTAGCTTTGTCTCAATATCTGTAGACATATAATGAAGTTTCCT
AATGTCGAAGTAAATTCAGTTGATAAGTGCTTGGTTTGTATGTAATGAAT
GTTCCCAGTTTTTGTAATTCAAAATAAAAGGTGCTTG
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