CX297687

Overview
NameCX297687
Unique NameCX297687
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: BSAA_STAAC (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain COL) GN=bsaA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.187e-31
Identity = 58/114 (50.88%), Postives = 82/114 (71.93%), Query Frame = 2
Query:   20 LSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            L  LY+KYK+QG  IL FPCNQFG QEPG  E+  +     +   FP+  K+DV G++  PL+++L +++ G F + IKWNF+KFLVD+EGNVV+R+AP   P+ IE++I+KLL
Sbjct:   45 LQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKLL 158          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX4_PONPY (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Pongo pygmaeus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.509e-30
Identity = 66/116 (56.90%), Postives = 85/116 (73.28%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 349
            NYT+L  L+ +Y   GL ILAFPCNQFG QEPG NE+I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   PL IEKD+
Sbjct:   79 NYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX4_HUMAN (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Homo sapiens GN=GPX4 PE=1 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 1.509e-30
Identity = 66/116 (56.90%), Postives = 85/116 (73.28%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 349
            NYT+L  L+ +Y   GL ILAFPCNQFG QEPG NE+I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   PL IEKD+
Sbjct:   79 NYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPO_LACLM (Glutathione peroxidase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gpo PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.362e-30
Identity = 59/114 (51.75%), Postives = 79/114 (69.30%), Query Frame = 2
Query:   20 LSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            L +LY+ YK+QGLEIL FPCNQF  Q+ G+N +I EF    +   F +F K+ VNG  A PLY+ LK    G    +IKWNF+KFL+D++G V+ER+AP T P  +E++IKKLL
Sbjct:   44 LEKLYETYKDQGLEILGFPCNQFANQDAGENTEINEFCQLNYGVTFTMFQKIKVNGKEAHPLYQFLKKEAKGALSGTIKWNFTKFLIDRDGQVIERFAPKTEPEEMEEEIKKLL 157          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX4_MACFU (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Macaca fuscata fuscata GN=GPX4 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 4.391e-30
Identity = 65/116 (56.03%), Postives = 85/116 (73.28%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 349
            NYT+L  L+ +Y   G+ ILAFPCNQFG QEPG NE+I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   PL IEKD+
Sbjct:   79 NYTQLVDLHARYAECGVRILAFPCNQFGKQEPGSNEKIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX1_SCHMA (Glutathione peroxidase OS=Schistosoma mansoni GN=GPX1 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 4.391e-30
Identity = 60/119 (50.42%), Postives = 84/119 (70.59%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 364
            NY +L +++ +   +GL ILAFPCNQFG QEP    +I++F   ++  +F +F K+ VNG +A  LYK LKS + G   ++IKWNFSKFLVD++G  V+RY+PTT+P  IE DI +LLE
Sbjct:   49 NYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELLE 167          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX4_BOVIN (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Bos taurus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 5.735e-30
Identity = 65/116 (56.03%), Postives = 84/116 (72.41%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 349
            NYT+L  L+ +Y   GL ILAFPCNQFG QEPG N +I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   PL IEKD+
Sbjct:   79 NYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNAEIKEFA-AGYNVKFDLFSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX4_CEBAP (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Cebus apella GN=GPX4 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 7.490e-30
Identity = 65/116 (56.03%), Postives = 84/116 (72.41%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 349
            NYT+L  L+ +Y   GL ILAFPCNQFG QEPG NE+I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   P  IEKD+
Sbjct:   79 NYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDL 193          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX4_CALJA (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Callithrix jacchus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.278e-29
Identity = 66/116 (56.90%), Postives = 83/116 (71.55%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 349
            NYT+L  L+ +Y   GL ILAFPCNQFG QEPG NE+I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G  G++IKWNF+KFLVDK G VV+RY P   P  IEKD+
Sbjct:   79 NYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGTLGNAIKWNFTKFLVDKNGCVVKRYGPMEEPQVIEKDL 193          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX4_HYLLA (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Hylobates lar GN=GPX4 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.179e-29
Identity = 64/116 (55.17%), Postives = 83/116 (71.55%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 349
            NYT+L  L+ +Y   GL  LAFPCNQFG QEPG NE+I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL DK G VV+RY P   PL +EKD+
Sbjct:   79 NYTQLVDLHARYAECGLRFLAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLFDKNGCVVKRYGPMEEPLVLEKDL 193          
The following BLAST results are available for this feature:
BLAST of CX297687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
BSAA_STAAC5.187e-3150.88Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
GPX4_PONPY1.509e-3056.90Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_HUMAN1.509e-3056.90Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPO_LACLM3.362e-3051.75Glutathione peroxidase OS=Lactococcus lactis subsp... [more]
GPX4_MACFU4.391e-3056.03Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX1_SCHMA4.391e-3050.42Glutathione peroxidase OS=Schistosoma mansoni GN=G... [more]
GPX4_BOVIN5.735e-3056.03Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_CEBAP7.490e-3056.03Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_CALJA1.278e-2956.90Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_HYLLA2.179e-2955.17Phospholipid hydroperoxide glutathione peroxidase,... [more]

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Properties
Property NameValue
Genbank descriptionC06004B09SK RindPdig24 Citrus clementina cDNA clone C06004B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297687 ID=CX297687; Name=CX297687; organism=Citrus clementina; type=EST; length=587bp
GAGGTTCAACTACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGAATC
AAGGCTTGGAGATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAAGAG
CCAGGAGACAATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAAGGC
TGAGTTTCCCATATTTGATAAGGTTGATGTTAATGGTGATAATGCTGCTC
CTTTATACAAGCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGACAGC
ATCAAGTGGAACTTTTCCAAGTTCTTGGTGGATAAGGAGGGGAATGTTGT
TGAGCGTTATGCCCCCACCACTAGCCCTCTGAGCATTGAGAAGGATATAA
AGAAACTTCTGGAGACTGCTTAACCGCTGCTACAACTTGCATGATCAGCT
TCTTGCTAATAAAACTAGAGTATCATGCTGTAGAAGCACTCTGGTGGAAA
TATATGTTTAGCTTTGTCTCAATATCTGTAGACATATAATGAAGTTTCCT
AATGTCGAAGTAAATTCAGTTGATAAGTGCTTGGTTTGTATGTAATGAAT
GTTCCCAGTTTTTGTAATTCAAAATAAAAGGTGCTTG
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