CX297687

Overview
NameCX297687
Unique NameCX297687
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX41_MOUSE (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Mus musculus GN=Gpx4 PE=1 SV=4)

HSP 1 Score: 127.872 bits (320), Expect = 3.717e-29
Identity = 63/116 (54.31%), Postives = 84/116 (72.41%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 349
            NYT+L  L+ +Y   GL ILAFPCNQFG QEPG N++I+EFA   +  +F ++ K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   P  IEKD+
Sbjct:   79 NYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEFA-AGYNVKFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDL 193          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX42_RAT (Phospholipid hydroperoxide glutathione peroxidase, nuclear OS=Rattus norvegicus GN=Gpx4 PE=2 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 4.855e-29
Identity = 63/116 (54.31%), Postives = 83/116 (71.55%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 349
            NYT+L  L+ +Y   GL ILAFPCNQFG QEPG N++I+EFA   +   F ++ K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   P  IEKD+
Sbjct:  135 NYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEFA-AGYNVRFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDL 249          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX41_RAT (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Rattus norvegicus GN=Gpx4 PE=1 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 4.855e-29
Identity = 63/116 (54.31%), Postives = 83/116 (71.55%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 349
            NYT+L  L+ +Y   GL ILAFPCNQFG QEPG N++I+EFA   +   F ++ K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   P  IEKD+
Sbjct:   79 NYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEFA-AGYNVRFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDL 193          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX1_SCHPO (Glutathione peroxidase OS=Schizosaccharomyces pombe GN=gpx1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.281e-29
Identity = 58/117 (49.57%), Postives = 79/117 (67.52%), Query Frame = 2
Query:   11 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            Y  L  LY KYK++G  IL FPCNQFG QEPG +E+I +F    +   FP+  K++VNGDN  P+Y+ LKS K  L  + IKWNF KFLV+++G V+ERY+  + P  +E DI+ +L
Sbjct:   42 YKGLEALYQKYKDRGFIILGFPCNQFGNQEPGSDEEIAQFCQKNYGVTFPVLAKINVNGDNVDPVYQFLKSQKKQLGLERIKWNFEKFLVNRQGQVIERYSSISKPEHLENDIESVL 158          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX4_PIG (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Sus scrofa GN=GPX4 PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 1.412e-28
Identity = 63/116 (54.31%), Postives = 83/116 (71.55%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 349
            NYT+L  L+ +Y   GL ILAFPCNQFG QEPG + +I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   P  IEKD+
Sbjct:   79 NYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSDAEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDL 193          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: BSAA_STAES (Glutathione peroxidase homolog bsaA OS=Staphylococcus epidermidis (strain ATCC 12228) GN=bsaA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.845e-28
Identity = 56/114 (49.12%), Postives = 78/114 (68.42%), Query Frame = 2
Query:   20 LSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            L +LYD+YK+Q   IL FPCNQFG QEPG  E+  +     +   FPI +KVDV GDN  PL+  L ++  G+  + IKWNF+KFL+D+EGNV++R++P   P  I+ +I+KLL
Sbjct:   45 LQKLYDEYKDQRFIILGFPCNQFGGQEPGSGEEAAQNCKINYGVTFPIHEKVDVKGDNQHPLFHFLTNAAKGMINEKIKWNFTKFLIDREGNVIKRFSPQKKPEQIKTEIEKLL 158          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX42_MOUSE (Phospholipid hydroperoxide glutathione peroxidase, nuclear OS=Mus musculus GN=Gpx4 PE=2 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 4.110e-28
Identity = 61/116 (52.59%), Postives = 83/116 (71.55%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 349
            NYT+L  L+ +Y   GL ILAFPCNQFG QEPG N++I+EFA   +  +F ++ K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G  V+RY P   P  IE+D+
Sbjct:  135 NYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEFA-AGYNVKFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCEVKRYGPMEEPQVIERDL 249          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPO_SYNY3 (Putative glutathione peroxidase OS=Synechocystis sp. (strain PCC 6803) GN=slr1171 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.040e-27
Identity = 58/123 (47.15%), Postives = 81/123 (65.85%), Query Frame = 2
Query:   11 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLF------GDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            Y  L  LY+++ ++G  +L FPCNQFG QEPG + +I+ F  TR+   FP+F+KV+VNG NA PL+K L ++  G+        + IKWNF+KFLVD++G VV+RY     P  I  DI+KLL
Sbjct:   47 YQGLQALYNRFGDRGFTVLGFPCNQFGQQEPGGSGEIKNFCETRYGVTFPLFEKVEVNGPNAHPLFKFLTAASPGMAIPFLGGAEDIKWNFTKFLVDRQGKVVKRYGSIAKPDEIAADIEKLL 169          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: BSAA_STAEQ (Glutathione peroxidase homolog bsaA OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=bsaA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.751e-27
Identity = 57/118 (48.31%), Postives = 79/118 (66.95%), Query Frame = 2
Query:   11 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 364
            + +L  LY KY   GLEIL+FPCN F  QEPG  + I      +F   FPI  K++VNG++  PLY  LK  + GLFG  IKWNF+KF+VD++GN+V+R+ P  +P  +EK I++LL+
Sbjct:   41 FNKLEMLYKKYHKYGLEILSFPCNDFNNQEPGLIKDIYRVYKYKFGITFPIHAKINVNGEHEHPLYTLLKCKQPGLFGSQIKWNFTKFVVDQQGNIVKRFLPCDNPNQMEKLIRQLLK 158          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPXA_NEIMF (Glutathione peroxidase homolog OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=gpxA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.119e-25
Identity = 63/137 (45.99%), Postives = 82/137 (59.85%), Query Frame = 2
Query:   11 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK-----GGLFGD---------------SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            Y  L +LY +Y  +GLEIL FPCNQF  Q P  + +I +    +F  +F IFDK++VNG N APLY +LKS K       LF D                IKWNF+KFLV+++G VVER+AP+ +P  IE DI+ LL
Sbjct:   41 YEALQKLYAQYTAEGLEILDFPCNQFREQAPESSGEIAQVCMMKFGTKFKIFDKIEVNGANTAPLYAYLKSVKPQDKGNHLFKDFVLKLAALGEKRDEGDIKWNFTKFLVNRDGEVVERFAPSVTPEEIEADIRALL 177          
The following BLAST results are available for this feature:
BLAST of CX297687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
GPX41_MOUSE3.717e-2954.31Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX42_RAT4.855e-2954.31Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX41_RAT4.855e-2954.31Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX1_SCHPO8.281e-2949.57Glutathione peroxidase OS=Schizosaccharomyces pomb... [more]
GPX4_PIG1.412e-2854.31Phospholipid hydroperoxide glutathione peroxidase,... [more]
BSAA_STAES1.845e-2849.12Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
GPX42_MOUSE4.110e-2852.59Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPO_SYNY32.040e-2747.15Putative glutathione peroxidase OS=Synechocystis s... [more]
BSAA_STAEQ7.751e-2748.31Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
GPXA_NEIMF1.119e-2545.99Glutathione peroxidase homolog OS=Neisseria mening... [more]

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Properties
Property NameValue
Genbank descriptionC06004B09SK RindPdig24 Citrus clementina cDNA clone C06004B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297687 ID=CX297687; Name=CX297687; organism=Citrus clementina; type=EST; length=587bp
GAGGTTCAACTACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGAATC
AAGGCTTGGAGATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAAGAG
CCAGGAGACAATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAAGGC
TGAGTTTCCCATATTTGATAAGGTTGATGTTAATGGTGATAATGCTGCTC
CTTTATACAAGCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGACAGC
ATCAAGTGGAACTTTTCCAAGTTCTTGGTGGATAAGGAGGGGAATGTTGT
TGAGCGTTATGCCCCCACCACTAGCCCTCTGAGCATTGAGAAGGATATAA
AGAAACTTCTGGAGACTGCTTAACCGCTGCTACAACTTGCATGATCAGCT
TCTTGCTAATAAAACTAGAGTATCATGCTGTAGAAGCACTCTGGTGGAAA
TATATGTTTAGCTTTGTCTCAATATCTGTAGACATATAATGAAGTTTCCT
AATGTCGAAGTAAATTCAGTTGATAAGTGCTTGGTTTGTATGTAATGAAT
GTTCCCAGTTTTTGTAATTCAAAATAAAAGGTGCTTG
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