CX297687

Overview
NameCX297687
Unique NameCX297687
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX7_HUMAN (Glutathione peroxidase 7 OS=Homo sapiens GN=GPX7 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.620e-16
Identity = 45/118 (38.14%), Postives = 61/118 (51.69%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            +Y  L QL          +LAFPCNQFG QEP  N++I+ FA   +   FP+F K+ V G  A P +K+L  +     G    WNF K+LV  +G VV  + PT S   +   I  L+
Sbjct:   63 HYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTS----GKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALV 176          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX7_BOVIN (Glutathione peroxidase 7 OS=Bos taurus GN=GPX7 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.620e-16
Identity = 45/118 (38.14%), Postives = 61/118 (51.69%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            +Y  L QL          +LAFPCNQFG QEP  N++I+ FA   +   FP+F K+ V G  A P +K+L  +     G    WNF K+LV  +G V+  + PT S   I   I  L+
Sbjct:   62 HYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTETS----GKEPTWNFWKYLVAPDGKVIGAWDPTVSVEEIRPQITALV 175          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX1_RAT (Glutathione peroxidase 1 OS=Rattus norvegicus GN=Gpx1 PE=1 SV=4)

HSP 1 Score: 82.4185 bits (202), Expect = 1.791e-15
Identity = 51/142 (35.92%), Postives = 71/142 (50.00%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            +YTE++ L  +   +GL +L FPCNQFG QE G NE+I       R    F+  F +F+K +VNG+ A PL+  L+++      D                    I WNF KFLV  +G  V RY+     + IE DI+ LL
Sbjct:   53 DYTEMNDLQKRLGPRGLVVLGFPCNQFGHQENGKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGEKAHPLFTFLRNALPAPSDDPTALMTDPKYIIWSPVCRNDISWNFEKFLVGPDGVPVRRYSRRFRTIDIEPDIEALL 194          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX1_MOUSE (Glutathione peroxidase 1 OS=Mus musculus GN=Gpx1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 3.990e-15
Identity = 50/142 (35.21%), Postives = 72/142 (50.70%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSK-------------------GGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            +YTE++ L  +   +GL +L FPCNQFG QE G NE+I       R    F+  F +F+K +VNG+ A PL+  L+++                      +  + I WNF KFLV  +G  V RY+     + IE DI+ LL
Sbjct:   53 DYTEMNDLQKRLGPRGLVVLGFPCNQFGHQENGKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGEKAHPLFTFLRNALPTPSDDPTALMTDPKYIIWSPVCRNDIAWNFEKFLVGPDGVPVRRYSRRFRTIDIEPDIETLL 194          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX6_HUMAN (Glutathione peroxidase 6 OS=Homo sapiens GN=GPX6 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.806e-15
Identity = 50/138 (36.23%), Postives = 73/138 (52.90%), Query Frame = 2
Query:   11 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI---QEFAC--TRFKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGDS------------IKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 364
            Y EL+ L ++ KN G+ +LAFPCNQFG QEPG N +I    ++ C  + F   F +F+K DVNG+    ++  LK+S      L G S            I+WNF KFLV  +G  V  +       +++ DI + L+
Sbjct:   79 YPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLK 216          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX8_BOVIN (Probable glutathione peroxidase 8 OS=Bos taurus GN=GPX8 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.888e-15
Identity = 42/118 (35.59%), Postives = 62/118 (52.54%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            NY  L +L+ ++      +LAFPCNQFG  EP  ++++  FA   F   FPIF K+ + G  A P ++ L  S         +WNF K+LV+ EG VV+ + P      I  +I  L+
Sbjct:   85 NYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVVSFARNNFGVTFPIFHKIKILGSEAEPAFRFLVDSS----KKEPRWNFWKYLVNPEGQVVKTWRPEEPIEVIRPEIAALI 198          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX8_HUMAN (Probable glutathione peroxidase 8 OS=Homo sapiens GN=GPX8 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.161e-14
Identity = 41/118 (34.75%), Postives = 62/118 (52.54%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            NY  L +L+ ++      +LAFPCNQFG  EP  +++++ FA   +   FPIF K+ + G    P ++ L  S         +WNF K+LV+ EG VV+ + P      I  DI  L+
Sbjct:   85 NYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSS----KKEPRWNFWKYLVNPEGQVVKFWKPEEPIEVIRPDIAALV 198          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX3_CAEEL (Glutathione peroxidase OS=Caenorhabditis elegans GN=C11E4.2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.516e-14
Identity = 47/126 (37.30%), Postives = 66/126 (52.38%), Query Frame = 2
Query:   11 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK--------AEFPIFDKVDVNGDNAAPLYKHLKSS------KGGLFGD---------SIKWNFSKFLVDKEGNVVERYAPT 319
            YT+ + + +KY+ QGL ++AFPCNQF  QEP +N ++     T  +         E  I+ K+DVNGDN  PLY+ +K S      K G   +          I WNF KFL+D+ G    R+ PT
Sbjct:   79 YTDFNPMLEKYQAQGLTLVAFPCNQFYLQEPAENHELMN-GLTYVRPGNGWTPHQELHIYGKIDVNGDNHHPLYEFVKESCPQTVDKIGKTDELMYNPVRPSDITWNFEKFLIDRNGQPRFRFHPT 203          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX2_RAT (Glutathione peroxidase 2 OS=Rattus norvegicus GN=Gpx2 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 2.586e-14
Identity = 49/143 (34.27%), Postives = 71/143 (49.65%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 364
            +YT+L++L  ++  + L +L FPCNQFG QE   NE+I       R    F+  F +  K DVNG N  P++ +LK      + D                    + WNF KFL+  EG    RY+ T   ++IE DIK+LL+
Sbjct:   46 DYTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRHGGGFQPTFSLTQKCDVNGQNQHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRTFQTINIEPDIKRLLK 187          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX5_MACFA (Epididymal secretory glutathione peroxidase OS=Macaca fascicularis GN=GPX5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.761e-14
Identity = 50/138 (36.23%), Postives = 70/138 (50.72%), Query Frame = 2
Query:   11 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFG------------DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 364
            Y EL+ L ++ K  GL +L FPCNQFG QEPGDN++I       R    F   F +F+K DVNG+    ++  LK S      + G              I+WNF KFLV  +G  V R++   +  S++ DI   L+
Sbjct:   79 YPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPNFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLK 216          
The following BLAST results are available for this feature:
BLAST of CX297687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
GPX7_HUMAN1.620e-1638.14Glutathione peroxidase 7 OS=Homo sapiens GN=GPX7 P... [more]
GPX7_BOVIN1.620e-1638.14Glutathione peroxidase 7 OS=Bos taurus GN=GPX7 PE=... [more]
GPX1_RAT1.791e-1535.92Glutathione peroxidase 1 OS=Rattus norvegicus GN=G... [more]
GPX1_MOUSE3.990e-1535.21Glutathione peroxidase 1 OS=Mus musculus GN=Gpx1 P... [more]
GPX6_HUMAN6.806e-1536.23Glutathione peroxidase 6 OS=Homo sapiens GN=GPX6 P... [more]
GPX8_BOVIN8.888e-1535.59Probable glutathione peroxidase 8 OS=Bos taurus GN... [more]
GPX8_HUMAN1.161e-1434.75Probable glutathione peroxidase 8 OS=Homo sapiens ... [more]
GPX3_CAEEL1.516e-1437.30Glutathione peroxidase OS=Caenorhabditis elegans G... [more]
GPX2_RAT2.586e-1434.27Glutathione peroxidase 2 OS=Rattus norvegicus GN=G... [more]
GPX5_MACFA5.761e-1436.23Epididymal secretory glutathione peroxidase OS=Mac... [more]

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Properties
Property NameValue
Genbank descriptionC06004B09SK RindPdig24 Citrus clementina cDNA clone C06004B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297687 ID=CX297687; Name=CX297687; organism=Citrus clementina; type=EST; length=587bp
GAGGTTCAACTACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGAATC
AAGGCTTGGAGATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAAGAG
CCAGGAGACAATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAAGGC
TGAGTTTCCCATATTTGATAAGGTTGATGTTAATGGTGATAATGCTGCTC
CTTTATACAAGCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGACAGC
ATCAAGTGGAACTTTTCCAAGTTCTTGGTGGATAAGGAGGGGAATGTTGT
TGAGCGTTATGCCCCCACCACTAGCCCTCTGAGCATTGAGAAGGATATAA
AGAAACTTCTGGAGACTGCTTAACCGCTGCTACAACTTGCATGATCAGCT
TCTTGCTAATAAAACTAGAGTATCATGCTGTAGAAGCACTCTGGTGGAAA
TATATGTTTAGCTTTGTCTCAATATCTGTAGACATATAATGAAGTTTCCT
AATGTCGAAGTAAATTCAGTTGATAAGTGCTTGGTTTGTATGTAATGAAT
GTTCCCAGTTTTTGTAATTCAAAATAAAAGGTGCTTG
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