CX297687

Overview
NameCX297687
Unique NameCX297687
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX2_MOUSE (Glutathione peroxidase 2 OS=Mus musculus GN=Gpx2 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 6.370e-13
Identity = 46/143 (32.17%), Postives = 70/143 (48.95%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 364
            +Y +L++L  ++  + L +L FPCNQFG QE   NE+I       R    ++  F +  K DVNG N  P++ +LK      + D                    + WNF KFL+  EG    RY+ +   ++IE DIK+LL+
Sbjct:   46 DYNQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFSLTQKCDVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRSFQTINIEPDIKRLLK 187          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX2_HYLLA (Glutathione peroxidase 2 OS=Hylobates lar GN=GPX2 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.370e-13
Identity = 46/143 (32.17%), Postives = 71/143 (49.65%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 364
            ++T+L++L  ++  + L +L FPCNQFG QE   NE+I       R    ++  F +  K +VNG N  P++ +LK      + D                    + WNF KFL+  EG    RY+ T   ++IE DIK+LL+
Sbjct:   46 DFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLK 187          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX2_HUMAN (Glutathione peroxidase 2 OS=Homo sapiens GN=GPX2 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 6.370e-13
Identity = 46/143 (32.17%), Postives = 71/143 (49.65%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 364
            ++T+L++L  ++  + L +L FPCNQFG QE   NE+I       R    ++  F +  K +VNG N  P++ +LK      + D                    + WNF KFL+  EG    RY+ T   ++IE DIK+LL+
Sbjct:   46 DFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLK 187          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX5_PIG (Epididymal secretory glutathione peroxidase OS=Sus scrofa GN=GPX5 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.319e-13
Identity = 49/138 (35.51%), Postives = 68/138 (49.28%), Query Frame = 2
Query:   11 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGD------------SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 364
            Y EL+ L ++ K  GL +L FPCNQFG QEPG+N +I       R    +   F +F+K DVNG+    ++  LK S      L G              I+WNF KFLV  +G  V R+   T   +++ DI   L+
Sbjct:   77 YPELNTLQEELKPFGLVVLGFPCNQFGKQEPGENSEILLGLKYVRPGGGYVPNFQLFEKGDVNGEKEQKVFTFLKHSCPHPSELIGSIGYISWEPIRVHDIRWNFEKFLVGPDGVPVMRWVHETPISTVKSDILAYLK 214          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX3_MOUSE (Glutathione peroxidase 3 OS=Mus musculus GN=Gpx3 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 8.319e-13
Identity = 50/133 (37.59%), Postives = 67/133 (50.38%), Query Frame = 2
Query:   11 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKS----------SKGGLFGD-----SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 349
            Y EL+ L ++    GL IL FP NQFG QEPG+N +I       R    F   F +F+K DVNG+     Y  LK+          S G LF +      I+WNF KFLV  +G  V R+   T+  +++ DI
Sbjct:   79 YLELNALQEELGPFGLVILGFPSNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTAELLGSPGRLFWEPMKIHDIRWNFEKFLVGPDGIPVMRWYHRTTVSNVKMDI 211          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX1_RABIT (Glutathione peroxidase 1 OS=Oryctolagus cuniculus GN=GPX1 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 8.319e-13
Identity = 46/142 (32.39%), Postives = 69/142 (48.59%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            +YT++++L ++   + L +L FPCNQFG QE   NE+I       R    F+  F +F K +VNG  A+PL+  L+ +      D                    + W+F KFLV  +G  V RY+     + IE DI+ LL
Sbjct:   52 DYTQMNELQERLGPRALVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFQKCEVNGAKASPLFAFLREALPPPSDDPTALMTDPKFITWCPVCRNDVSWSFEKFLVGPDGVPVRRYSRRFPTIDIEPDIQALL 193          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX1_PANTR (Glutathione peroxidase 1 OS=Pan troglodytes GN=GPX1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.419e-12
Identity = 46/142 (32.39%), Postives = 69/142 (48.59%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS-------------------IKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 361
            +YT++++L  +   +GL +L FPCNQFG QE   NE+I       R    F+  F +F+K +VNG  A  L+  L+ +      D+                   + WNF KFLV  +G  + RY+     + IE DI+ LL
Sbjct:   53 DYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHTLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 194          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX2_CEBAP (Glutathione peroxidase 2 OS=Cebus apella GN=GPX2 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.853e-12
Identity = 46/143 (32.17%), Postives = 70/143 (48.95%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 364
            ++T+L++L  ++  + L +L FPCNQFG QE   NE+I       R    ++  F +  K +VNG N  P++ +LK        D                    + WNF KFL+  EG    RY+ T   ++IE DIK+LL+
Sbjct:   46 DFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPHDDPFSLMTDPKFIIWSPVCRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLK 187          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX8_TETNG (Probable glutathione peroxidase 8 OS=Tetraodon nigroviridis GN=gpx8 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.421e-12
Identity = 41/119 (34.45%), Postives = 62/119 (52.10%), Query Frame = 2
Query:    8 NYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPL-SIEKDIKKLL 361
            NY  L +L+ +       +LAFPC QFG  E G +   + FA   +   FP F ++ + G  A P ++ L  S   +     +WNF KFLV+ EG VV R+  T  P+ SI +++  L+
Sbjct:   86 NYRSLQELHRELGPSHFNVLAFPCAQFGETETGSSRDSEAFAKATYGVTFPFFSRIKIMGSEAEPAFRFLTDSVQKV----PRWNFWKFLVNPEGKVV-RFWRTDEPMESIRREVTALV 199          
BLAST of CX297687 vs. ExPASy Swiss-Prot
Match: GPX5_RAT (Epididymal secretory glutathione peroxidase OS=Rattus norvegicus GN=Gpx5 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.421e-12
Identity = 51/133 (38.35%), Postives = 62/133 (46.62%), Query Frame = 2
Query:   11 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS----------KGGLFGDSIK-----WNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 349
            Y EL+ L D  K  GL IL FPCNQFG QEPGDN +I       R    F   F +F K DVNG+    ++  LK S              F + IK     WNF KFLV   G  V R+       +++ DI
Sbjct:   79 YPELNALQDDLKQFGLVILGFPCNQFGKQEPGDNTEILPGLKYVRPGKGFLPNFQLFAKGDVNGEKEQEIFTFLKRSCPHPSETVVTSKHTFWEPIKVHDIRWNFEKFLVGPNGVPVMRWFHQAPVSTVKSDI 211          
The following BLAST results are available for this feature:
BLAST of CX297687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
GPX2_MOUSE6.370e-1332.17Glutathione peroxidase 2 OS=Mus musculus GN=Gpx2 P... [more]
GPX2_HYLLA6.370e-1332.17Glutathione peroxidase 2 OS=Hylobates lar GN=GPX2 ... [more]
GPX2_HUMAN6.370e-1332.17Glutathione peroxidase 2 OS=Homo sapiens GN=GPX2 P... [more]
GPX5_PIG8.319e-1335.51Epididymal secretory glutathione peroxidase OS=Sus... [more]
GPX3_MOUSE8.319e-1337.59Glutathione peroxidase 3 OS=Mus musculus GN=Gpx3 P... [more]
GPX1_RABIT8.319e-1332.39Glutathione peroxidase 1 OS=Oryctolagus cuniculus ... [more]
GPX1_PANTR1.419e-1232.39Glutathione peroxidase 1 OS=Pan troglodytes GN=GPX... [more]
GPX2_CEBAP1.853e-1232.17Glutathione peroxidase 2 OS=Cebus apella GN=GPX2 P... [more]
GPX8_TETNG2.421e-1234.45Probable glutathione peroxidase 8 OS=Tetraodon nig... [more]
GPX5_RAT2.421e-1238.35Epididymal secretory glutathione peroxidase OS=Rat... [more]

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Properties
Property NameValue
Genbank descriptionC06004B09SK RindPdig24 Citrus clementina cDNA clone C06004B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297687 ID=CX297687; Name=CX297687; organism=Citrus clementina; type=EST; length=587bp
GAGGTTCAACTACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGAATC
AAGGCTTGGAGATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAAGAG
CCAGGAGACAATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAAGGC
TGAGTTTCCCATATTTGATAAGGTTGATGTTAATGGTGATAATGCTGCTC
CTTTATACAAGCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGACAGC
ATCAAGTGGAACTTTTCCAAGTTCTTGGTGGATAAGGAGGGGAATGTTGT
TGAGCGTTATGCCCCCACCACTAGCCCTCTGAGCATTGAGAAGGATATAA
AGAAACTTCTGGAGACTGCTTAACCGCTGCTACAACTTGCATGATCAGCT
TCTTGCTAATAAAACTAGAGTATCATGCTGTAGAAGCACTCTGGTGGAAA
TATATGTTTAGCTTTGTCTCAATATCTGTAGACATATAATGAAGTTTCCT
AATGTCGAAGTAAATTCAGTTGATAAGTGCTTGGTTTGTATGTAATGAAT
GTTCCCAGTTTTTGTAATTCAAAATAAAAGGTGCTTG
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