CX297689

Overview
NameCX297689
Unique NameCX297689
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length763
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297689 vs. ExPASy Swiss-Prot
Match: 1433B_SHEEP (14-3-3 protein beta/alpha (Fragments) OS=Ovis aries GN=YWHAB PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.708e-31
Identity = 71/120 (59.17%), Postives = 83/120 (69.17%), Query Frame = 3
Query:   57 YKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPEEGGE 416
            YKMKGDY+RYL+E    D+++    +S +           E+ PTHPIRLGLALNFSVFYYEILNSP            EAIAELD+LNEESYKDSTLIMQLLRDNLTLWTS+   + G+
Sbjct:   84 YKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSP------------EAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEGD 191          
BLAST of CX297689 vs. ExPASy Swiss-Prot
Match: 14338_ORYSJ (Putative 14-3-3-like protein GF14-H OS=Oryza sativa subsp. japonica GN=GF14H PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.333e-27
Identity = 71/143 (49.65%), Postives = 87/143 (60.84%), Query Frame = 3
Query:   18 IPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPEEGGEQSKGDEVQAE 446
            +P + SGE+ VF+YKMKGDYYRYLAEF    ++K A D SL                        A  FS+   EI+NSPERA  +AKQA DEA AE++S   E YKDS L+MQLL++NL LWTS+L   GGE SK D+V  E
Sbjct:  107 LPLANSGENVVFFYKMKGDYYRYLAEFSTGTEKKAATDQSLMAYQAWPC----------------AQLFSLL--EIMNSPERASQVAKQALDEATAEINSAGVEGYKDSMLMMQLLKENLALWTSEL--TGGETSKDDDVVME 229          
BLAST of CX297689 vs. ExPASy Swiss-Prot
Match: 1433X_MAIZE (14-3-3-like protein (Fragment) OS=Zea mays PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.227e-21
Identity = 50/61 (81.97%), Postives = 56/61 (91.80%), Query Frame = 3
Query:  243 ILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPEEGGEQSK 425
            ILNSP+RAC+LAKQAFDEAI+ELDSL EESYKDSTLIMQLL DNLTLWTSD  E+GG++ K
Sbjct:    1 ILNSPDRACNLAKQAFDEAISELDSLGEESYKDSTLIMQLLXDNLTLWTSDTNEDGGDEIK 61          
The following BLAST results are available for this feature:
BLAST of CX297689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
1433B_SHEEP1.708e-3159.1714-3-3 protein beta/alpha (Fragments) OS=Ovis arie... [more]
14338_ORYSJ3.333e-2749.65Putative 14-3-3-like protein GF14-H OS=Oryza sativ... [more]
1433X_MAIZE1.227e-2181.9714-3-3-like protein (Fragment) OS=Zea mays PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionC06004B11SK RindPdig24 Citrus clementina cDNA clone C06004B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297689 ID=CX297689; Name=CX297689; organism=Citrus clementina; type=EST; length=763bp
GAGGTTGATGAAACCTAATCCCATCCTCCACATCTGGAGAATCAACCGTG
TTTTACTATAAGATGAAAGGAGATTATTACCGTTACCTAGCTGAGTTCAA
AGGTGCTGATGATCGTAAGGAAGCTGCAGATCATTCACTTAAGGCTTACG
AGGCTGCTACAGCTGCAGCAGCCTCAGAGTTACCCCCAACTCATCCAATC
AGACTTGGCCTGGCTCTTAACTTTTCTGTTTTCTACTATGAGATTTTGAA
CTCACCTGAGAGGGCTTGCCACCTGGCTAAACAAGCATTTGATGAGGCGA
TTGCTGAACTTGATAGCCTTAATGAAGAGTCCTACAAGGACAGCACCCTT
ATTATGCAGCTTCTTCGGGATAATCTCACCTTGTGGACCTCGGATCTACC
GGAGGAGGGAGGTGAGCAATCTAAAGGTGATGAAGTTCAAGCAGAGAGCT
AGCCGGGGATGCATGAGCATCAGGAGGAGAAATTGTGCTAGTTGGGTTCT
AATATCTATTAGTATTAGTAGTATAGGGATTGAAAGAACATTTGGCTTGT
ATAATACTTATTACATGTTTTTAATTTCAGGTTGTTGTGCTATTTTCTGT
TTACAAAAAAAAAAGGCCGCTCTTTGTGCTGCAGCTAGAGTATATAAATT
CTGAAAGAGAGTAAGCGACTAAGCGCTATAGAAAAGGACAAAAGAGAGAG
AGGCTGGAGAAATGGCTACTTGCTTGTGGATTCATCCGCATCAGCATCAG
CCTCAGCATCATC
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