CX297691

Overview
NameCX297691
Unique NameCX297691
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: PDR5_ORYSJ (Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp. japonica GN=PDR5 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.892e-44
Identity = 78/182 (42.86%), Postives = 115/182 (63.19%), Query Frame = 1
Query:   10 LAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            L+YAF+Q  +E  Y A Q V+Y +++YSM+G+ WKA +FF+FL+ ++ +F  FTL+ MM+VA T +  + A+L  F LS WN F+GF+IPR  IP+WWRW+YW +PV+WT+YG++ SQ  D +  V +PG + TM VK  L+ + GFK+D                       I  +NFQ+R
Sbjct: 1273 LSYAFAQGFVEFCYSAVQGVLYTILIYSMIGYEWKADKFFYFLFFMIAAFAYFTLFSMMLVACTASEMLAAVLVSFVLSSWNNFAGFIIPRPLIPVWWRWFYWANPVSWTIYGVIASQFADSDRVVTVPGQSTTMVVKDFLEKNMGFKHDFLGYVVLAHFGYVIIFFFLFGYGIKCLNFQKR 1454          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.471e-44
Identity = 85/180 (47.22%), Postives = 111/180 (61.67%), Query Frame = 1
Query:   16 YAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            YAF QV IEL Y+  QT++Y +++YSM+GF W   +F W+L+ +  + + FT YGMM V LTP   I AI+S  F ++WNLFSG+LIPR +IP+WWRWY W+ PVAWTLYGLV SQ GDI+  +E      T TV Q + D FGF ++                    + AI   NFQRR
Sbjct: 1275 YAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFTLLYFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAWTLYGLVASQFGDIQHVLE----GDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSFAIMKFNFQRR 1450          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: AB32G_ARATH (ABC transporter G family member 32 OS=Arabidopsis thaliana GN=ABCG32 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.471e-44
Identity = 83/182 (45.60%), Postives = 109/182 (59.89%), Query Frame = 1
Query:   10 LAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            L +AF+QV IE  YV  Q+ +Y  I Y+M  F W A +F W+L+ +  S M FT YGMM  A+TP   + +I++  F  LWNLFSGF+IP  +IP+WWRWYYW +PVAWTLYGL+ SQ GD E +V++      + VKQLL+D  G+K+D                      AI   NFQRR
Sbjct: 1239 LPFAFAQVFIEFPYVLAQSTIYSTIFYAMAAFEWSAVKFLWYLFFMYFSIMYFTFYGMMTTAITPNHNVASIIAAPFYMLWNLFSGFMIPYKRIPLWWRWYYWANPVAWTLYGLLVSQYGDDERSVKLSDGIHQVMVKQLLEDVMGYKHDFLGVSAIMVVAFCVFFSLVFAFAIKAFNFQRR 1420          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.391e-44
Identity = 81/182 (44.51%), Postives = 114/182 (62.64%), Query Frame = 1
Query:   10 LAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            L YA++QVLIE+ ++  QT++Y L++YSM+GF W A +F W+++ +  +F+ FT YGMM VA+TP   I AI++  F ++WN+F+GF+IPR +IPIWWRWYYW  PVAWTLYGLV SQ G+    +    S    TVK  L+   GF++D                      +I  +NFQRR
Sbjct: 1264 LPYAYAQVLIEVPHILVQTLLYGLLVYSMIGFDWTAAKFLWYMFFMFFTFLYFTYYGMMAVAMTPNSDIAAIVAAAFYAIWNIFAGFIIPRPRIPIWWRWYYWACPVAWTLYGLVVSQFGEYTDTM----SDVDETVKDFLRRFLGFRHDFLPVVGVMVVVFTVLFASIFAFSIKTLNFQRR 1441          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: PDR15_ORYSJ (Pleiotropic drug resistance protein 15 OS=Oryza sativa subsp. japonica GN=PDR15 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.661e-43
Identity = 80/182 (43.96%), Postives = 112/182 (61.54%), Query Frame = 1
Query:   10 LAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            + YA +QV++E+ YV  +TV+Y LI+Y MM F W   +FFWF Y+   +F+ FT YGMM V+++P  Q+ +IL   F +L+NLFSGF IPR +IP WW WYYWL PVAWT+YGL+ SQ GD+E  + +PG  +   V+  +KD FG+  D                      +I  +NFQ+R
Sbjct: 1329 IPYALAQVVVEIPYVFVETVIYTLIVYPMMSFQWTPAKFFWFFYVSFFTFLYFTYYGMMNVSVSPNLQVASILGAAFYTLFNLFSGFFIPRPKIPKWWVWYYWLCPVAWTVYGLIVSQYGDVEDFITVPGQ-SDQQVRPFIKDYFGYDPDFMGVVAAVLAGFTVFFAFTYAYSIRTLNFQQR 1509          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: PDR6_ORYSJ (Pleiotropic drug resistance protein 6 OS=Oryza sativa subsp. japonica GN=PDR6 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.313e-42
Identity = 77/182 (42.31%), Postives = 108/182 (59.34%), Query Frame = 1
Query:   10 LAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            L +AFS V +E  Y+  Q+++Y  I YS+  F W A +F W+L+ +  + + FT YGMM  A+TP   +  I++  F +LWNLF GF+IPR +IP WWRWYYW +PV+WTLYGL+TSQ GD++  + +     T T    L+D FGF++D                     LAI  +NFQRR
Sbjct: 1269 LPFAFSLVTVEFPYILVQSLIYGTIFYSLGSFEWTAVKFLWYLFFMYFTLLYFTFYGMMTTAITPNHTVAPIIAAPFYTLWNLFCGFMIPRKRIPAWWRWYYWANPVSWTLYGLLTSQFGDLDQPLLLADGITTTTAVDFLRDHFGFRHDFLGVVAGMVAGFCVLFAVVFALAIKYLNFQRR 1450          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.313e-42
Identity = 83/180 (46.11%), Postives = 109/180 (60.56%), Query Frame = 1
Query:   16 YAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            YAF QV+IE+ Y   Q  VY +I+Y+M+GF W A +FFW+L+ ++ + + FT YGMM V LTP   I +I+S  F ++WNLFSGF+IPR ++PIWWRWY W  PVAWTLYGLV SQ GDIE  +E         VK  +++ FGFK+                       AI   NFQ+R
Sbjct: 1283 YAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIETPME-----DGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSI (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.313e-42
Identity = 83/180 (46.11%), Postives = 109/180 (60.56%), Query Frame = 1
Query:   16 YAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            YAF QV+IE+ Y   Q  VY +I+Y+M+GF W A +FFW+L+ ++ + + FT YGMM V LTP   I +I+S  F ++WNLFSGF+IPR ++PIWWRWY W  PVAWTLYGLV SQ GDIE  +E         VK  +++ FGFK+                       AI   NFQ+R
Sbjct: 1283 YAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIETPME-----DGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.946e-42
Identity = 82/180 (45.56%), Postives = 109/180 (60.56%), Query Frame = 1
Query:   16 YAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            YAF QV IE  Y   Q+++Y +I+YSM+GF W A +FFW+L+ +  +F+ FT YGMM V LTP+  + +I+S  F  +WNLFSGF+IPR ++PIWWRWY W+ PVAWTLYGLV SQ GDI      P    T  VK  +++ F FK+                       AI  +NFQ+R
Sbjct: 1290 YAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFFWYLFFMFFTFLYFTFYGMMAVGLTPSYHVASIVSSAFYGIWNLFSGFIIPRPKVPIWWRWYCWICPVAWTLYGLVASQFGDI----MTPMDDGT-PVKIFVENYFDFKHSWLGVVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1464          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: PDR12_ORYSJ (Pleiotropic drug resistance protein 12 OS=Oryza sativa subsp. japonica GN=PDR12 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.697e-41
Identity = 77/182 (42.31%), Postives = 108/182 (59.34%), Query Frame = 1
Query:   10 LAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            + YA +QV++E+ YV  QT  Y LI+Y+MM F W A +FFWF ++   SF+ FT YGMM VA++P  ++ AI +  F SL+NLFSGF IPR +IP WW WYYWL P+AWT+YGL+ +Q GD+E  + +PG  +  T+   +   FG+                        + I  +NFQ R
Sbjct: 1320 MPYAIAQVVMEIPYVFVQTAYYTLIVYAMMSFQWTAAKFFWFFFVSYFSFLYFTYYGMMTVAISPNHEVAAIFAAAFYSLFNLFSGFFIPRPRIPKWWIWYYWLCPLAWTVYGLIVTQYGDLEQIISVPGQ-SNQTISYYVTHHFGYHRKFMPVVAPVLVLFAVFFAFMYAICIKKLNFQHR 1500          
The following BLAST results are available for this feature:
BLAST of CX297691 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PDR5_ORYSJ1.892e-4442.86Pleiotropic drug resistance protein 5 OS=Oryza sat... [more]
PDR4_ORYSJ2.471e-4447.22Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
AB32G_ARATH2.471e-4445.60ABC transporter G family member 32 OS=Arabidopsis ... [more]
TUR2_SPIPO9.391e-4444.51Pleiotropic drug resistance protein TUR2 OS=Spirod... [more]
PDR15_ORYSJ4.661e-4343.96Pleiotropic drug resistance protein 15 OS=Oryza sa... [more]
PDR6_ORYSJ2.313e-4242.31Pleiotropic drug resistance protein 6 OS=Oryza sat... [more]
PDR3_ORYSJ2.313e-4246.11Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR3_ORYSI2.313e-4246.11Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR2_ORYSJ3.946e-4245.56Probable pleiotropic drug resistance protein 2 OS=... [more]
PDR12_ORYSJ5.697e-4142.31Pleiotropic drug resistance protein 12 OS=Oryza sa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06004C01SK RindPdig24 Citrus clementina cDNA clone C06004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297691 ID=CX297691; Name=CX297691; organism=Citrus clementina; type=EST; length=681bp
GAGGTCTACCTAGCTTACGCTTTTTCGCAGGTGCTTATAGAGTTGATATA
TGTGGCATTTCAAACTGTCGTGTATGTTCTGATCCTATACTCCATGATGG
GATTTGCGTGGAAAGCAAAAAGATTCTTCTGGTTCTTGTACATGGTAATG
ATGTCCTTTATGCAATTCACATTGTATGGGATGATGATTGTCGCACTGAC
TCCAGCTCCGCAAATTGGTGCCATACTTTCCGGATTCTTCCTCTCCCTGT
GGAATTTGTTCTCTGGTTTTCTCATTCCTCGCGTGCAAATCCCAATTTGG
TGGAGGTGGTACTACTGGCTCTCTCCCGTGGCTTGGACACTCTATGGCCT
TGTTACAAGTCAAGTTGGTGACATAGAAGGCAACGTGGAAATTCCGGGAA
GCACCGCTACGATGACAGTGAAGCAGCTTCTAAAAGATAGTTTCGGGTTC
AAGTATGACTTCCTTCCGGTTGTTGCTGTAGTCAAACTTGTCTGGCTTCT
CGTCTTCGTCTTTGTGTTTACCCTTGCCATCACCTTAATTAACTTCCAGA
GGAGATAAATAGCTCGAAAATCTCCAACATATGGTAGGAAATGTTTGATG
TAATTGTTAGTCATGAATGAGGCGAGGGGAATAAAAGGTTGTTACCACTT
TGCGCATTCTTTAAAAAAAAAAAAAAAAAAA
back to top