CX297691

Overview
NameCX297691
Unique NameCX297691
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: PDR1_ORYSJ (Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.333e-39
Identity = 75/182 (41.21%), Postives = 105/182 (57.69%), Query Frame = 1
Query:   10 LAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            L YAF QV IE  Y   Q+V+Y +I+YSM+GF W   +FFW+L+ +  + + FT YGMM V LTP+  + +I+S  F ++WNLF+GF+I R   P+WWRWY W+ PVAWTLYGL+ SQ GDI     +      + V   +++ F FK+                       AI  +NFQ+R
Sbjct: 1292 LPYAFGQVAIEFPYTLVQSVIYSIIVYSMIGFQWTVAKFFWYLFFMFFTLLYFTFYGMMAVGLTPSYHVASIVSSAFYAIWNLFTGFVISRPATPVWWRWYCWICPVAWTLYGLIVSQYGDI-----VTPMDDGIPVNVFVENYFDFKHSWLGFVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1468          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: PDR3_TOBAC (Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.101e-35
Identity = 72/181 (39.78%), Postives = 105/181 (58.01%), Query Frame = 1
Query:   13 AYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            AYA +QV IE+ Y+  Q + + +I Y M+G+ W A + FW+ Y +  + + FT  GMM+V++TP+  + AIL   F +++NLF+GFL+P+ QIP WW W+Y+L+P +WTL G++TSQ GDIE   EI       TV   L D FGF ++                       I  +NFQRR
Sbjct: 1269 AYALAQVAIEIPYLLAQALAFTVITYPMIGYYWSAYKVFWYFYSMFCTLLYFTYLGMMLVSMTPSFPVAAILQSSFYTMFNLFAGFLMPKAQIPKWWIWFYYLTPTSWTLNGMLTSQYGDIE--KEITVFQEKKTVAAFLGDYFGFHHNQLPIVAFVLIAYPLVFASLFAFFIGKLNFQRR 1447          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: AB31G_ARATH (ABC transporter G family member 31 OS=Arabidopsis thaliana GN=ABCG31 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.151e-33
Identity = 69/182 (37.91%), Postives = 105/182 (57.69%), Query Frame = 1
Query:   10 LAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            + YA +Q L+E+ Y+  QT++Y +I Y  +GF     +F  +L  + ++F  FT YGMM V LTP   + A++S  F SLWNL SGFL+ +  IP+WW W+Y++ PVAWTL G++ SQ+GD+E  +  P      TVK+ ++  FG+K +                     L++  +NFQRR
Sbjct: 1247 IPYAAAQGLVEIPYILTQTILYGVITYFTIGFERTFSKFVLYLVFMFLTFTYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLLSGFLVQKPLIPVWWIWFYYICPVAWTLQGVILSQLGDVESMINEP--LFHGTVKEFIEYYFGYKPNMIGVSAAVLVGFCALFFSAFALSVKYLNFQRR 1426          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: PDR13_ORYSJ (Pleiotropic drug resistance protein 13 OS=Oryza sativa subsp. japonica GN=PDR13 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.741e-33
Identity = 69/182 (37.91%), Postives = 107/182 (58.79%), Query Frame = 1
Query:   16 YAFSQV---LIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQR 552
            YA +QV   L+E+ Y+A QT+++ LI Y M+ +    ++   +L  + ++F  FT YGM+ V LTP   + +++S  F SLWNL SGFLIP+ +IP WW W+Y++ PVAWTL G++TSQ+GD++  +  PG     TV + L+ + GF+                       ++I +INFQR
Sbjct: 1261 YAAAQVYHGLVEIPYIAVQTLIFGLITYFMVNYERNIRKLVLYLIYMFLTFTYFTFYGMVAVGLTPTQHMASVVSSAFYSLWNLLSGFLIPQSRIPGWWIWFYYICPVAWTLRGVITSQLGDVDTRIVGPGFDG--TVHEFLQQNLGFEQGMTGATVAVLVAFSVFFFSIYAISIKMINFQR 1440          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: AB43G_ARATH (ABC transporter G family member 43 OS=Arabidopsis thaliana GN=ABCG43 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.170e-32
Identity = 66/181 (36.46%), Postives = 101/181 (55.80%), Query Frame = 1
Query:   13 AYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            AY+ +QVL+E+ Y  FQ+++YV+I+Y M+G+ W   + FW  Y +  S + F  +GM++V +TP   I   L   F ++ NLF+G+++P+  IP WW W Y+LSP +W L GL+TSQ GD+E   EI        V   L+D FG++YD                       I  +NFQ++
Sbjct: 1212 AYSLAQVLVEIPYSLFQSIIYVIIVYPMVGYHWSVYKVFWSFYSIFCSLLIFNYFGMLLVVVTPNVHIAFTLRSSFYAIVNLFAGYVMPKPNIPRWWIWMYYLSPTSWVLNGLLTSQYGDME--KEILAFGEKKKVSAFLEDYFGYRYDSLALVAVVLIAFPILLASLFAFFIGKLNFQKK 1390          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: AB37G_ARATH (ABC transporter G family member 37 OS=Arabidopsis thaliana GN=ABCG37 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.170e-32
Identity = 69/181 (38.12%), Postives = 98/181 (54.14%), Query Frame = 1
Query:   13 AYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            AYA  QV+ E+ Y+  Q   +V++ Y M+GF   A + FW LY +  S + F    M +V++TP   + AIL   F   +NLFSGFLIP+ Q+P WW W Y+L+P +WTL G ++SQ GDI   + + G +   TV + LKD FGF +D                       +  +NFQRR
Sbjct: 1272 AYALGQVVTEIPYIFIQAAEFVIVTYPMIGFYPSAYKVFWSLYSMFCSLLTFNYLAMFLVSITPNFMVAAILQSLFYVGFNLFSGFLIPQTQVPGWWIWLYYLTPTSWTLNGFISSQYGDIHEEINVFGQST--TVARFLKDYFGFHHDLLAVTAVVQIAFPIALASMFAFFVGKLNFQRR 1450          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: AB42G_ARATH (ABC transporter G family member 42 OS=Arabidopsis thaliana GN=ABCG42 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.701e-32
Identity = 66/181 (36.46%), Postives = 101/181 (55.80%), Query Frame = 1
Query:   13 AYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            AY+ +QVL+E+ Y  FQ++VYV+I+Y M+G+ W   + FW  Y +  + + F  +GM++V +TP   I   L   F ++ NLF+G+++P+  IP WW W Y+LSP +W L GL+TSQ GD+E   EI        V   L+D FG++YD                       I  +NFQ++
Sbjct: 1214 AYSLAQVLVEIPYSLFQSIVYVIIVYPMVGYHWSVFKVFWSFYSIFCTLLIFNYFGMLLVVVTPNVHIAFTLRSSFYAIVNLFAGYVMPKPNIPRWWIWMYYLSPTSWVLNGLLTSQYGDME--KEILAFGEKKKVSDFLEDYFGYRYDSLALVAVVLIAFPILLASLFAFFIGKLNFQKK 1392          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: AB41G_ARATH (ABC transporter G family member 41 OS=Arabidopsis thaliana GN=ABCG41 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.345e-31
Identity = 65/181 (35.91%), Postives = 103/181 (56.91%), Query Frame = 1
Query:   13 AYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            AY+FSQVL+E+ Y   Q+++  +I+Y M+G+     + FW LY +  S + F   GM++VALTP   +   L   F S+ NLF+GF++P+ +IP WW W Y+LSP +W L GL++SQ GD+E  + + G     +V   L+D FG+K+D                       ++ +NFQ++
Sbjct: 1219 AYSFSQVLVEVPYSLLQSLLCTIIVYPMIGYHMSVYKMFWSLYSIFCSLLIFNYCGMLMVALTPNIHMALTLRSTFFSMVNLFAGFVMPKQKIPKWWIWMYYLSPTSWVLEGLLSSQYGDVEKEITVFGE--KKSVSAFLEDYFGYKHDSLAVVAFVLIAFPIIVASLFAFFMSKLNFQKK 1397          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: AB33G_ARATH (ABC transporter G family member 33 OS=Arabidopsis thaliana GN=ABCG33 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.525e-30
Identity = 62/181 (34.25%), Postives = 98/181 (54.14%), Query Frame = 1
Query:   13 AYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            AYA +QV+ E+ Y+  Q+  +V+++Y M+GF     + FW LY +  + + F    M ++++TP   + AIL   F + +N+F+GFLIP+ QIP WW W+Y+++P +WTL    +SQ GDI   +   G   T TV   L+D FGF +D                       +  +NFQ+R
Sbjct: 1235 AYALAQVVTEIPYIFIQSAEFVIVIYPMIGFYASFSKVFWSLYAMFCNLLCFNYLAMFLISITPNFMVAAILQSLFFTTFNIFAGFLIPKPQIPKWWVWFYYITPTSWTLNLFFSSQYGDIHQKINAFGE--TKTVASFLEDYFGFHHDRLMITAIILIAFPIALATMYAFFVAKLNFQKR 1413          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: AB30G_ARATH (ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.316e-29
Identity = 61/149 (40.94%), Postives = 93/149 (62.42%), Query Frame = 1
Query:   13 AYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYD 459
            AY+FSQVLIE+ Y   Q+++  +I+Y  +G+     + FW LY +  S + F   GM++VALTP   +   L   F S+ NLF+GF+IP+ +IP WW W Y+LSP +W L GL++SQ GD++  + + G      V   L+D FG+K++
Sbjct: 1222 AYSFSQVLIEVPYSLLQSLLCTIIVYPTIGYHMSVYKMFWSLYSIFCSLLIFNYSGMLMVALTPNIHMAVTLRSSFFSMLNLFAGFVIPKQKIPKWWIWMYYLSPTSWVLEGLLSSQYGDVDKEILVFGE--KKRVSAFLEDYFGYKHE 1368          
The following BLAST results are available for this feature:
BLAST of CX297691 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PDR1_ORYSJ5.333e-3941.21Probable pleiotropic drug resistance protein 1 OS=... [more]
PDR3_TOBAC6.101e-3539.78Pleiotropic drug resistance protein 3 OS=Nicotiana... [more]
AB31G_ARATH1.151e-3337.91ABC transporter G family member 31 OS=Arabidopsis ... [more]
PDR13_ORYSJ9.741e-3337.91Pleiotropic drug resistance protein 13 OS=Oryza sa... [more]
AB43G_ARATH2.170e-3236.46ABC transporter G family member 43 OS=Arabidopsis ... [more]
AB37G_ARATH2.170e-3238.12ABC transporter G family member 37 OS=Arabidopsis ... [more]
AB42G_ARATH3.701e-3236.46ABC transporter G family member 42 OS=Arabidopsis ... [more]
AB41G_ARATH5.345e-3135.91ABC transporter G family member 41 OS=Arabidopsis ... [more]
AB33G_ARATH4.525e-3034.25ABC transporter G family member 33 OS=Arabidopsis ... [more]
AB30G_ARATH1.316e-2940.94ABC transporter G family member 30 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC06004C01SK RindPdig24 Citrus clementina cDNA clone C06004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297691 ID=CX297691; Name=CX297691; organism=Citrus clementina; type=EST; length=681bp
GAGGTCTACCTAGCTTACGCTTTTTCGCAGGTGCTTATAGAGTTGATATA
TGTGGCATTTCAAACTGTCGTGTATGTTCTGATCCTATACTCCATGATGG
GATTTGCGTGGAAAGCAAAAAGATTCTTCTGGTTCTTGTACATGGTAATG
ATGTCCTTTATGCAATTCACATTGTATGGGATGATGATTGTCGCACTGAC
TCCAGCTCCGCAAATTGGTGCCATACTTTCCGGATTCTTCCTCTCCCTGT
GGAATTTGTTCTCTGGTTTTCTCATTCCTCGCGTGCAAATCCCAATTTGG
TGGAGGTGGTACTACTGGCTCTCTCCCGTGGCTTGGACACTCTATGGCCT
TGTTACAAGTCAAGTTGGTGACATAGAAGGCAACGTGGAAATTCCGGGAA
GCACCGCTACGATGACAGTGAAGCAGCTTCTAAAAGATAGTTTCGGGTTC
AAGTATGACTTCCTTCCGGTTGTTGCTGTAGTCAAACTTGTCTGGCTTCT
CGTCTTCGTCTTTGTGTTTACCCTTGCCATCACCTTAATTAACTTCCAGA
GGAGATAAATAGCTCGAAAATCTCCAACATATGGTAGGAAATGTTTGATG
TAATTGTTAGTCATGAATGAGGCGAGGGGAATAAAAGGTTGTTACCACTT
TGCGCATTCTTTAAAAAAAAAAAAAAAAAAA
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