CX297691

Overview
NameCX297691
Unique NameCX297691
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: AB38G_ARATH (ABC transporter G family member 38 OS=Arabidopsis thaliana GN=ABCG38 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.246e-29
Identity = 59/182 (32.42%), Postives = 104/182 (57.14%), Query Frame = 1
Query:   10 LAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXTLAITLINFQRR 555
            L YAFSQV+IE+ Y   Q  +Y +I+Y M+G+ W A +FF  ++   +S +     G+M+++++P  +I +IL+G   + WN+FSGF IPR ++ +W RW+ ++ P  W LYGL  +Q GD+E  ++        TV + +K+ +G++Y+                      ++ ++NFQ+R
Sbjct: 1242 LPYAFSQVIIEIPYTMAQACIYGVIVYGMIGYEWTASKFFLNIFFTFISILYSIYTGIMVISVSPNQEIASILNGVISTSWNVFSGFTIPRPRMHVWLRWFTYVCPGWWGLYGLTIAQYGDVETRLD-----TGETVVEFMKNYYGYEYNFLWVVSLTLIAFSMFFVFIYAFSVKILNFQKR 1418          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: ABCG2_DICDI (ABC transporter G family member 2 OS=Dictyostelium discoideum GN=abcG2 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 37/119 (31.09%), Postives = 70/119 (58.82%), Query Frame = 1
Query:    7 YLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQ 363
            +L+  FS++ I L+    +TVV+ +++Y M G    A++F +FL M  +  + F  +  M+ A  P   + ++++   L+ + LFSGF+ P+  I  WW W YW+SP+ +   GL++++
Sbjct:  469 FLSLIFSEIPIALL----ETVVFCVLVYWMCGLQANAEKFIYFLLMNFVGDLAFQSFFKMVSAFAPNATLASVIAPAALAPFILFSGFMAPKRSIGGWWIWIYWISPIKYAFEGLMSNE 583          

HSP 2 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 32/123 (26.02%), Postives = 63/123 (51.22%), Query Frame = 1
Query:   16 YAFSQVLIELIYVAFQTVVYVLILYSMMGFAW--KAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIE 378
            Y F+ ++ +L +V    ++Y + +Y + G         FF+  ++   ++  F++  M+   + P  +I   L G  LS+ +LF+GF+IP   I   W W+Y L P  + L  ++ ++  D+E
Sbjct: 1129 YLFTFIVTDLPWVFLSAIIYTVPMYFISGLRLDPNGAPFFYHSFISFTTYFNFSMLAMVFATVLPTDEIAHALGGVALSISSLFAGFMIPPASIAKGWHWFYQLDPTTYPLAIVMINEFQDLE 1251          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: ABCGG_DICDI (ABC transporter G family member 16 OS=Dictyostelium discoideum GN=abcG16 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 34/119 (28.57%), Postives = 66/119 (55.46%), Query Frame = 1
Query:   10 LAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQV 366
            +AY F+ ++ +LI+     +++  I Y ++G    A RFF+FL  + +          M+   +P   I + ++  + SL+ L +G+LI R  IPI+WRW +++SP  W    ++++Q+
Sbjct:  587 IAYFFAGLVSDLIWNFIDVIIFCSISYWLIGLNHSADRFFFFLLAIYLLDCLVNRVSKMVSIYSPNAAIASTIAPLYFSLFLLMAGYLIHRNSIPIYWRWMHYISPFKWVFEAILSNQL 705          
BLAST of CX297691 vs. ExPASy Swiss-Prot
Match: ABCG6_DICDI (ABC transporter G family member 6 OS=Dictyostelium discoideum GN=abcG6 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 32/113 (28.32%), Postives = 57/113 (50.44%), Query Frame = 1
Query:   13 AYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGL 351
            AY  S ++ ++     +   +  I+Y +        RF +F+ +++M+      +  M  A++P  +I  +++   LS+W LFSGF  P+  I  WW W Y++SP  W   GL
Sbjct:  560 AYFISSIICDIPAGILEVAFFGPIVYWLANLRPVFIRFVYFMLLLIMTDNLSLSFAKMCAAISPTIEIANVIASVILSIWLLFSGFTAPKNDIGGWWIWLYYISPYTWIFQGL 672          
The following BLAST results are available for this feature:
BLAST of CX297691 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
AB38G_ARATH2.246e-2932.42ABC transporter G family member 38 OS=Arabidopsis ... [more]
ABCG2_DICDI2.041e-1431.09ABC transporter G family member 2 OS=Dictyostelium... [more]
ABCGG_DICDI5.026e-1328.57ABC transporter G family member 16 OS=Dictyosteliu... [more]
ABCG6_DICDI3.602e-1128.32ABC transporter G family member 6 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionC06004C01SK RindPdig24 Citrus clementina cDNA clone C06004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297691 ID=CX297691; Name=CX297691; organism=Citrus clementina; type=EST; length=681bp
GAGGTCTACCTAGCTTACGCTTTTTCGCAGGTGCTTATAGAGTTGATATA
TGTGGCATTTCAAACTGTCGTGTATGTTCTGATCCTATACTCCATGATGG
GATTTGCGTGGAAAGCAAAAAGATTCTTCTGGTTCTTGTACATGGTAATG
ATGTCCTTTATGCAATTCACATTGTATGGGATGATGATTGTCGCACTGAC
TCCAGCTCCGCAAATTGGTGCCATACTTTCCGGATTCTTCCTCTCCCTGT
GGAATTTGTTCTCTGGTTTTCTCATTCCTCGCGTGCAAATCCCAATTTGG
TGGAGGTGGTACTACTGGCTCTCTCCCGTGGCTTGGACACTCTATGGCCT
TGTTACAAGTCAAGTTGGTGACATAGAAGGCAACGTGGAAATTCCGGGAA
GCACCGCTACGATGACAGTGAAGCAGCTTCTAAAAGATAGTTTCGGGTTC
AAGTATGACTTCCTTCCGGTTGTTGCTGTAGTCAAACTTGTCTGGCTTCT
CGTCTTCGTCTTTGTGTTTACCCTTGCCATCACCTTAATTAACTTCCAGA
GGAGATAAATAGCTCGAAAATCTCCAACATATGGTAGGAAATGTTTGATG
TAATTGTTAGTCATGAATGAGGCGAGGGGAATAAAAGGTTGTTACCACTT
TGCGCATTCTTTAAAAAAAAAAAAAAAAAAA
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