CX297693

Overview
NameCX297693
Unique NameCX297693
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297693 vs. ExPASy Swiss-Prot
Match: CP1A1_MACFA (Cytochrome P450 1A1 OS=Macaca fascicularis GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.526e-13
Identity = 47/167 (28.14%), Postives = 87/167 (52.10%), Query Frame = 1
Query:  277 EEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTES--KDMLDALLKICEDKSVEIDIN------DIKHLFLVLFAAGTDTTSSTLEWAMTELLRNPDILSKVRLELEQTIGKGNPIEESDITRLPYLQAVLKETFRLHPAVPLLL 753
            E  G  N +DF P+L  L  + +       F  + + F   + + +K+   + F +   +D+ D+L++ C++K ++ + N       I ++ L LF AG DT ++ + W++  L+ NP +  K++ EL+  IG+      SD + LPY++A + ETFR    VP  +
Sbjct:  226 EVVGSGNPADFIPILRYLPNRSLNG-----FKDLNEKFHSFMQKMIKEHY-KTFEKGYIRDITDSLIEHCQEKQLDENANIQLSDEKIVNVVLDLFGAGFDTVTTAISWSLMYLVTNPRVQRKIQEELDTVIGRSRRPRLSDRSHLPYMEAFILETFRHSSFVPFTI 386          
BLAST of CX297693 vs. ExPASy Swiss-Prot
Match: CP17A_PAPCY (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Papio cynocephalus GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.526e-13
Identity = 58/222 (26.13%), Postives = 98/222 (44.14%), Query Frame = 1
Query:  139 GTAIHIGQAAFGTTLNLISNTIFSIDL--ADPTSKTAREFKQTNWGMMEEAGKPNLSDFFP---VLENLDLQGIRRRMTVYFGKMLDVFDR------------LIDQRLKQRQERDFTESKDMLDALLKICEDKSVEIDINDIKHLFLVLFAAGTDTTSSTLEWAMTELLRNPDILSKVRLELEQTIGKGNPIEESDITRLPYLQAVLKETFRLHPAVPLLL 753
            G  I I    F    N+IS   F+I     DP  K    +   N G+++  GK +L D FP   V  N  L+ ++R +      +  +F+             ++D  ++ +   D   +    D+  ++  D  +   I DI       F AG +TT+S ++W +  LL NP +  K+  E++Q +G       SD  RL  L+A ++E  R+ P  P+L+
Sbjct:  162 GQTIDISFPVFVAITNVISLICFNISYKNGDPELKIVHNY---NEGIIDSLGKESLVDLFPWLKVFPNKTLEKLKRHVKTRNDLLTKIFENYKEKFRSDSITNMLDVLMQAKMNSDNGNAGPDQDS--ELLSDNHILTTIGDI-------FGAGVETTTSVVKWIVAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRIRPVAPMLI 371          
BLAST of CX297693 vs. ExPASy Swiss-Prot
Match: CP17A_MACMU (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Macaca mulatta GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.526e-13
Identity = 58/222 (26.13%), Postives = 98/222 (44.14%), Query Frame = 1
Query:  139 GTAIHIGQAAFGTTLNLISNTIFSIDL--ADPTSKTAREFKQTNWGMMEEAGKPNLSDFFP---VLENLDLQGIRRRMTVYFGKMLDVFDR------------LIDQRLKQRQERDFTESKDMLDALLKICEDKSVEIDINDIKHLFLVLFAAGTDTTSSTLEWAMTELLRNPDILSKVRLELEQTIGKGNPIEESDITRLPYLQAVLKETFRLHPAVPLLL 753
            G  I I    F    N+IS   F+I     DP  K    +   N G+++  GK +L D FP   V  N  L+ ++R +      +  +F+             ++D  ++ +   D   +    D+  ++  D  +   I DI       F AG +TT+S ++W +  LL NP +  K+  E++Q +G       SD  RL  L+A ++E  R+ P  P+L+
Sbjct:  162 GQTIDISFPVFVAITNVISLICFNISYKNGDPELKIVHNY---NEGIIDSLGKESLVDLFPWLKVFPNKTLEKLKRHVKTRNDLLTKIFENYKEKFHSDSITNMLDVLMQAKMNSDNGNAGPDQDS--ELLSDNHILTTIGDI-------FGAGVETTTSVVKWIVAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRIRPVAPMLI 371          
BLAST of CX297693 vs. ExPASy Swiss-Prot
Match: CP17A_MACFA (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Macaca fascicularis GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.526e-13
Identity = 58/222 (26.13%), Postives = 98/222 (44.14%), Query Frame = 1
Query:  139 GTAIHIGQAAFGTTLNLISNTIFSIDL--ADPTSKTAREFKQTNWGMMEEAGKPNLSDFFP---VLENLDLQGIRRRMTVYFGKMLDVFDR------------LIDQRLKQRQERDFTESKDMLDALLKICEDKSVEIDINDIKHLFLVLFAAGTDTTSSTLEWAMTELLRNPDILSKVRLELEQTIGKGNPIEESDITRLPYLQAVLKETFRLHPAVPLLL 753
            G  I I    F    N+IS   F+I     DP  K    +   N G+++  GK +L D FP   V  N  L+ ++R +      +  +F+             ++D  ++ +   D   +    D+  ++  D  +   I DI       F AG +TT+S ++W +  LL NP +  K+  E++Q +G       SD  RL  L+A ++E  R+ P  P+L+
Sbjct:  162 GQTIDISFPVFVAITNVISLICFNISYKNGDPELKIVHNY---NEGIIDSLGKESLVDLFPWLKVFPNKTLEKLKRHVKTRNDLLTKIFENYKEKFHSDSITNMLDVLMQAKMNSDNGNAGPDQDS--ELLSDNHILTTIGDI-------FGAGVETTTSVVKWIVAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRIRPVAPMLI 371          
BLAST of CX297693 vs. ExPASy Swiss-Prot
Match: CP17A_FELCA (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Felis catus GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.526e-13
Identity = 61/225 (27.11%), Postives = 100/225 (44.44%), Query Frame = 1
Query:  139 GTAIHIGQAAFGTTLNLISNTIF--SIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTES-KDMLDALL-----------------KICEDKSVEIDINDIKHLFLVLFAAGTDTTSSTLEWAMTELLRNPDILSKVRLELEQTIGKGNPIEESDITRLPYLQAVLKETFRLHPAVPLLL 753
            G +I +    F    N+I    F  S    DP  K  + +   N G+++  GK NL D FPVL+    + + +       +     D L+ + L++ +E    +S  +MLD L+                 K+  DK +   I DI       F AG +TT+S + W +  LL +P +  K++ E++Q IG       SD  +L  L+A ++E  R+ P  P L+
Sbjct:  162 GQSIDLYLPLFLAVTNIICLICFNSSFKNGDPALKIIQNY---NEGILKTLGKDNLVDIFPVLKIFPNKTLEKMKNYVKNR-----DELLREILEKHKENFSNDSITNMLDVLIQARMNSDNNGAASDQDSKLLSDKHILTTIGDI-------FGAGVETTTSVVRWTVAFLLHHPQLYKKLQEEIDQNIGFSRTPTMSDRNQLILLEATIREVLRIRPVAPTLI 371          
BLAST of CX297693 vs. ExPASy Swiss-Prot
Match: C77A2_SOLME (Cytochrome P450 77A2 OS=Solanum melongena GN=CYP77A2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.526e-13
Identity = 65/250 (26.00%), Postives = 121/250 (48.40%), Query Frame = 1
Query:    4 GDTVENLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRA--GTAIHIGQAAFGTTLNLISNTIFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLK--QRQERDFTESK-DMLDALLKI-CEDKSVEIDINDIKHLFLVLFAAGTDTTSSTLEWAMTELLRNPDILSKVRLELEQTIGKGNPIEESDITRLPYLQAVLKETFRLHP 735
            G    +LRK    +  SS +L   + +R+  +  ++  ++    A  G    +  A F     L++   F +++ + T +   +  ++    ++    P L D+ P+L     +  +  M V   ++  +    I+QR K  +  E D T +    LD L  +  E ++      ++  L       GTDTT++ +EWA+  L+ NP+I S++  E+++T+G+ N I+E DI ++PYL AV+KE  R HP
Sbjct:  135 GPVWRSLRKNMVQNGLSSIRLKEFRAVRKSAMDKMIEKIRAEADANEGVVWVLKNARFAVFCILLA-MCFGVEMDEKTIEKIDQMMKSVLIALD----PRLDDYLPILSPFFSKQRKHAMDVRKQQIKTIVP-FIEQRKKILESPEIDKTAASFSYLDTLFDLKIEGRNSTPTYPELVTLCSEFLNGGTDTTATAIEWAIGRLIENPNIQSQLYEEIKKTVGE-NKIDEKDIEKMPYLNAVVKELLRKHP 377          
BLAST of CX297693 vs. ExPASy Swiss-Prot
Match: C71C3_MAIZE (Cytochrome P450 71C3 OS=Zea mays GN=CYP71C3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.526e-13
Identity = 65/260 (25.00%), Postives = 131/260 (50.38%), Query Frame = 1
Query:    4 GDTVENLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAG--TAIHIGQAAFGTTLNLISNTIFSIDLADPTSKTA-REFKQTNWGMMEEAGKPNLSDFFP--VLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQ---ERDFTESKDMLDALLKICEDKSVEIDINDIKHLFLVLFAAGTDTTSSTLEWAMTELLRNPDILSKVRLELEQ--TIGKGNPIEESDITRLPYLQAVLKETFRLHPAVPLLL 753
            G+  +  RK+ N+H  S++++ + +H R +++  ++  ++E       TA+ + +     T +++S ++           T  RE   TN  ++      NL  + P   L +L  + +  ++T +  +   + + +I + ++ R+   +++  ES D +D  L   E+    +D  ++K L + +F A  +T+   LE AM EL+ +  ++ K++ E+       K + I E D++ LPYL+A +KE  RLHP  PLLL
Sbjct:  148 GEYWQQTRKLMNTHLLSNKKVYSFRHGREEEVCLVVDNLREAAAKSPSTAVDMSEVLAAYTNDVVSRSVLGSTHRKKGRNTLFREMTMTNVDLLVGF---NLEYYIPRWPLTDLLFRLVCWKVTRHLKRWDALLEEVIHEHVEMRKLSGDKE-KESDDFIDIFLSRYEEYGFTMD--NVKSLLMNVFEAAIETSYLVLESAMAELMNHRRVMKKLQAEVRAYGAEKKLDMIREDDLSSLPYLKASMKEALRLHPPGPLLL 401          
BLAST of CX297693 vs. ExPASy Swiss-Prot
Match: CP17A_HORSE (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Equus caballus GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.605e-13
Identity = 63/252 (25.00%), Postives = 113/252 (44.84%), Query Frame = 1
Query:   67 DANQHLRR------KKIQDLLAYVQENCRAGTAIHIGQAAFGTTLNLISNTIFSIDL--ADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLE---NLDLQGIRRRMTVYFGKMLDVFDR------------LIDQRLKQRQERDFTESKDMLDALLKICEDKSVEIDINDIKHLFLVLFAAGTDTTSSTLEWAMTELLRNPDILSKVRLELEQTIGKGNPIEESDITRLPYLQAVLKETFRLHPAVPLLL 753
            D NQ L +        + DLLA      + G  I +    F    N+I    F+      DP  +T + + +   G++E   K N+ D FP L+   N  L+ +R  + +    +  +F++            ++D  ++ ++  D   +    D+  K+  DK +   I DI       F AG +TT+S ++W +  LL +P +  K++ E++Q +G       SD  RL  L+A ++E  R+ P  P+L+
Sbjct:  137 DGNQKLEKIICHETSLLCDLLA-----TQNGQTIDLSSPLFLAVTNVICWICFNSSYMKGDPALETMQNYHK---GILETLEKDNVVDIFPALKIFPNKSLEKMRHCVNIRNELLSKIFEKHKENFNSDSITSMLDLLIQAKKNSDNNNTGPDQDS--KLLSDKHILATIGDI-------FGAGVETTTSVVKWIVAFLLHDPQLKKKIQEEIDQNVGFSRTPTLSDRNRLLLLEATIREVLRIRPVAPMLI 371          
BLAST of CX297693 vs. ExPASy Swiss-Prot
Match: C79F1_ARATH (Dihomomethionine N-hydroxylase OS=Arabidopsis thaliana GN=CYP79F1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.605e-13
Identity = 59/263 (22.43%), Postives = 118/263 (44.87%), Query Frame = 1
Query:    4 GDTVENLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFGTTLNLISNTIFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLENL----------------DLQGIRRRMTVYFGKMLDVFDRLIDQRLKQ-RQERDFTESKDMLDALLKICEDKSVEIDIND-IKHLFLVLFAAGTDTTSSTLEWAMTELLRNPDILSKVRLELEQTIGKGNPIEESDITRLPYLQAVLKETFRLHPA 738
            G+    ++++  +   S + L   +  R  +  +L+AYV    +    + + +      L+ +     ++ +        +E   ++ G +  A K +L   F  L  L                ++ G  +R+T     +    + +ID+R++  R+E      +D LD  + + +     +   D IK   +    A  D  ++ +EW + E+L+NP+IL K   EL++ +G+   ++ESDI  L YL+A  +ETFR+HP+
Sbjct:  137 GEQFMKMKRVITTEIMSVKTLKMLEAARTIEADNLIAYVHSMYQRSETVDVRE------LSRVYGYAVTMRMLFGRRHVTKENVFSDDGRLGNAEKHHLEVIFNTLNCLPSFSPADYVERWLRGWNVDGQEKRVTENCNIVRSYNNPIIDERVQLWREEGGKAAVEDWLDTFITLKDQNGKYLVTPDEIKAQCVEFCIAAIDNPANNMEWTLGEMLKNPEILRKALKELDEVVGRDRLVQESDIPNLNYLKACCRETFRIHPS 393          
BLAST of CX297693 vs. ExPASy Swiss-Prot
Match: CP2C3_RABIT (Cytochrome P450 2C3 OS=Oryctolagus cuniculus GN=CYP2C3 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.015e-13
Identity = 64/204 (31.37%), Postives = 103/204 (50.49%), Query Frame = 1
Query:  169 FGTTLNLISNTIFS--IDLADPTSKTAREFKQTNWGMMEEAGKP--NLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQER-DFTESKDMLDALL----KICEDKSVEIDINDIKHLFLVLFAAGTDTTSSTLEWAMTELLRNPDILSKVRLELEQTIGKGNPIEESDITRLPYLQAVLKETFRLHPAVPLLL 753
            F    N+I + IF    D  D   KT  ++   N+ ++   G P   L + FP+L  L   G  R++     K +D   + I +++++ QE  D    +D +D  L    K    K  E  ++++      +F+AGTDTTS+TL++A+  LL++P+I +KV+ E+E  IG+       D TR+PY  AV+ E  R    VP  L
Sbjct:  171 FCVPCNVICSVIFQNRFDYDDEKFKTLIKYFHENFELL---GTPWIQLYNIFPILHYLP--GSHRQLF----KNIDGQIKFILEKVQEHQESLDSNNPRDFVDHFLIKMEKEKHKKQSEFTMDNLITTIWDVFSAGTDTTSNTLKFALLLLLKHPEITAKVQEEIEHVIGRHRSPCMQDRTRMPYTDAVMHEIQRYVDLVPTSL 365          
The following BLAST results are available for this feature:
BLAST of CX297693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
CP1A1_MACFA3.526e-1328.14Cytochrome P450 1A1 OS=Macaca fascicularis GN=CYP1... [more]
CP17A_PAPCY3.526e-1326.13Steroid 17-alpha-hydroxylase/17,20 lyase OS=Papio ... [more]
CP17A_MACMU3.526e-1326.13Steroid 17-alpha-hydroxylase/17,20 lyase OS=Macaca... [more]
CP17A_MACFA3.526e-1326.13Steroid 17-alpha-hydroxylase/17,20 lyase OS=Macaca... [more]
CP17A_FELCA3.526e-1327.11Steroid 17-alpha-hydroxylase/17,20 lyase OS=Felis ... [more]
C77A2_SOLME3.526e-1326.00Cytochrome P450 77A2 OS=Solanum melongena GN=CYP77... [more]
C71C3_MAIZE3.526e-1325.00Cytochrome P450 71C3 OS=Zea mays GN=CYP71C3 PE=2 S... [more]
CP17A_HORSE4.605e-1325.00Steroid 17-alpha-hydroxylase/17,20 lyase OS=Equus ... [more]
C79F1_ARATH4.605e-1322.43Dihomomethionine N-hydroxylase OS=Arabidopsis thal... [more]
CP2C3_RABIT6.015e-1331.37Cytochrome P450 2C3 OS=Oryctolagus cuniculus GN=CY... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06004C03SK RindPdig24 Citrus clementina cDNA clone C06004C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297693 ID=CX297693; Name=CX297693; organism=Citrus clementina; type=EST; length=754bp
GAGGGCGACACTGTGGAGAATCTTCGAAAAATATGCAACTCACATGCTTT
CTCTAGTCGCCAACTCGATGCCAATCAGCACCTTCGGCGTAAGAAAATCC
AAGATCTTCTAGCTTATGTCCAAGAAAATTGCCGTGCAGGTACAGCAATA
CATATTGGCCAAGCTGCTTTCGGCACTACGCTTAATTTGATATCCAACAC
AATTTTTTCTATTGACTTGGCTGATCCCACATCAAAAACTGCGCGAGAGT
TTAAGCAAACAAATTGGGGTATGATGGAAGAAGCTGGAAAGCCTAACTTG
TCCGATTTTTTTCCTGTGCTTGAGAATCTTGACTTGCAAGGTATAAGGCG
TCGCATGACAGTTTATTTTGGCAAGATGCTCGATGTATTTGATCGCTTGA
TTGATCAACGATTGAAGCAAAGACAAGAACGAGATTTCACCGAATCCAAA
GATATGTTAGATGCTCTTCTCAAAATTTGTGAAGACAAAAGCGTGGAGAT
TGATATAAATGATATCAAACACTTGTTTCTGGTTTTGTTTGCTGCGGGGA
CTGATACTACTTCGAGTACATTGGAATGGGCAATGACAGAACTACTTCGC
AACCCAGATATTTTATCAAAAGTCCGATTAGAGTTAGAACAAACGATTGG
CAAAGGCAATCCAATTGAGGAATCAGACATCACCCGCTTACCTTATCTAC
AAGCAGTACTCAAAGAAACCTTCAGGTTGCACCCGGCAGTTCCTCTTTTA
CTTC
back to top