CX297693

Overview
NameCX297693
Unique NameCX297693
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297693 vs. ExPASy Swiss-Prot
Match: CP2C4_RABIT (Cytochrome P450 2C4 OS=Oryctolagus cuniculus GN=CYP2C4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 44/153 (28.76%), Postives = 81/153 (52.94%), Query Frame = 1
Query:  292 PNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQER-DFTESKDMLDA-LLKICEDKSVEIDINDIKHLFLVLFAAGTDTTSSTLEWAMTELLRNPDILSKVRLELEQTIGKGNPIEESDITRLPYLQAVLKETFRLHPAVP 744
            P L D+FP        GI + +     K  D     I +++K+ Q+  D    +D +D  L+K+ ++ ++E  +  +      LF AGT+TTS+TL +++  LL++P++ ++V+ E+E+ IG+       D + +PY  AV+ E  R    +P
Sbjct:  220 PALLDYFP--------GIHKTLL----KNADYTKNFIMEKVKEHQKLLDVNNPRDFIDCFLIKMEKENNLEFTLGSLVIAVFDLFGAGTETTSTTLRYSLLLLLKHPEVAARVQEEIERVIGRHRSPCMQDRSHMPYTDAVIHEIQRFIDLLP 360          
BLAST of CX297693 vs. ExPASy Swiss-Prot
Match: CP1A1_OPSTA (Cytochrome P450 1A1 OS=Opsanus tau GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 45/163 (27.61%), Postives = 86/163 (52.76%), Query Frame = 1
Query:  286 GKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTES-KDMLDALLKICEDKSVE----IDINDIKHLFLV--LFAAGTDTTSSTLEWAMTELLRNPDILSKVRLELEQTIGKGNPIEESDITRLPYLQAVLKETFRLHPAVPLLL 753
            G  NL+DF PVL  L    +++ +++      D FD+ + + + +       ++ +D+ D+L+  CED+ ++    + ++D K + +V  LF AG DT S+ L W++  L+  P+I  ++  E++ ++G       SD   LP+L A + E FR    +P  +
Sbjct:  234 GTGNLADFIPVLRFLPSTAMKKFLSIN-----DRFDKFVKKIVSEHYATYNKDNIRDITDSLIDHCEDRKLDENCNVQVSDEKIVGIVNDLFGAGFDTVSTGLSWSVMYLVAYPEIQERLYQEIKDSVGTERMPLLSDRPSLPFLDAFILEIFRHSSFLPFTI 391          
BLAST of CX297693 vs. ExPASy Swiss-Prot
Match: CP17A_HUMAN (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Homo sapiens GN=CYP17A1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 57/221 (25.79%), Postives = 102/221 (46.15%), Query Frame = 1
Query:  139 GTAIHIGQAAFGTTLNLISNTIFSIDL--ADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLE---NLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTES-KDMLDALLKIC----------EDKSVEIDINDIKHLFLVLFAAGTDTTSSTLEWAMTELLRNPDILSKVRLELEQTIGKGNPIEESDITRLPYLQAVLKETFRLHPAVPLLL 753
            G +I I    F    N+IS   F+      DP     + +   N G+++   K +L D  P L+   N  L+ ++  + +         + L+++ L+  +E+  ++S  +MLD L++            +  S  +  N I      +F AG +TT+S ++W +  LL NP +  K+  E++Q +G       SD  RL  L+A ++E  RL P  P+L+
Sbjct:  162 GQSIDISFPVFVAVTNVISLICFNTSYKNGDPELNVIQNY---NEGIIDNLSKDSLVDLVPWLKIFPNKTLEKLKSHVKIR--------NDLLNKILENYKEKFRSDSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRLRPVAPMLI 371          
BLAST of CX297693 vs. ExPASy Swiss-Prot
Match: KO1_ARATH (Ent-kaurene oxidase OS=Arabidopsis thaliana GN=KO1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 50/167 (29.94%), Postives = 76/167 (45.51%), Query Frame = 1
Query:  250 FKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTESKDMLDALLKICEDKSVEIDINDIKHLFLVLFAAGTDTTSSTLEWAMTELLRNPDILSKVRLELEQTIGKGNPIEESDITRLPYLQAVLKETFRLHPAVPLL 750
            FK     MME A   +  DFFP L+ +  +    R+     + L V + LI  RLKQ      +ES D  D  L     ++  +    I  L         DTT  T EWA+ EL ++P +  ++  E++   G G   +E  ++++PYL  V  ET R +   PL+
Sbjct:  224 FKVLVHDMMEGAIDVDWRDFFPYLKWIPNKSFEARIQQKHKRRLAVMNALIQDRLKQNG----SESDD--DCYLNFLMSEAKTLTKEQIAILVWETIIETADTTLVTTEWAIYELAKHPSVQDRLCKEIQNVCG-GEKFKEEQLSQVPYLNGVFHETLRKYSPAPLV 383          
BLAST of CX297693 vs. ExPASy Swiss-Prot
Match: CP27A_RABIT (Sterol 26-hydroxylase, mitochondrial OS=Oryctolagus cuniculus GN=CYP27A1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 1
Query:  535 LFAAGTDTTSSTLEWAMTELLRNPDILSKVRLELEQTIGKGNPIEESDITRLPYLQAVLKETFRLHPAVP 744
            L  AG DTTS+TL WA+  L +NP+I + +R E+   +  G   +  D   +P L+AVLKET RL+P +P
Sbjct:  335 LLLAGVDTTSNTLTWALYHLSKNPEIQAALRKEVVGVVAAGQVPQHKDFAHMPLLKAVLKETLRLYPVIP 404          
BLAST of CX297693 vs. ExPASy Swiss-Prot
Match: CP241_CANFA (Cytochrome P450 2C41 OS=Canis familiaris GN=CYP2C41 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 40/118 (33.90%), Postives = 69/118 (58.47%), Query Frame = 1
Query:  406 QRLKQRQER-DFTESKDMLDA-LLKICEDKS---VEIDINDIKHLFLVLFAAGTDTTSSTLEWAMTELLRNPDILSKVRLELEQTIGKGNPIEESDITRLPYLQAVLKETFRLHPAVP 744
            +++K+ QE  D    +D +D  L+K+ ++K    +E    ++K +   LF AGT+TTS+TL + +  LL++P++  KV+ E+++ IG+       D +R+PY  AVL E  R    VP
Sbjct:  245 EKIKEHQESFDVNNPRDFIDYFLIKMEQEKHNQPLEFTFENLKTIATDLFGAGTETTSTTLRYGLLLLLKHPEVTVKVQEEIDRVIGRHQSPHMQDRSRMPYTNAVLHEIQRYIDLVP 362          
BLAST of CX297693 vs. ExPASy Swiss-Prot
Match: CP21A_BOVIN (Steroid 21-hydroxylase OS=Bos taurus GN=CYP21 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 44/130 (33.85%), Postives = 73/130 (56.15%), Query Frame = 1
Query:  391 DRLIDQRLKQRQERDFT-ESKDMLDALLKICEDKSVEIDINDIK----HLFLV-LFAAGTDTTSSTLEWAMTELLRNPDILSKVRLELEQTIGKG---NPIEESDITRLPYLQAVLKETFRLHPAVPLLL 753
            D +++++L + +E     + +DM D +L+    + VE     +     H+ +V LF  GT+TT+STL WA+  LL +P+I  +++ EL++ +G G   + +   D  RLP L A + E  RL P VPL L
Sbjct:  233 DHMVEKQLTRHKESMVAGQWRDMTDYMLQGVGRQRVEEGPGQLLEGHVHMSVVDLFIGGTETTASTLSWAVAFLLHHPEIQRRLQEELDRELGPGASCSRVTYKDRARLPLLNATIAEVLRLRPVVPLAL 362          
BLAST of CX297693 vs. ExPASy Swiss-Prot
Match: CP1A1_LIZAU (Cytochrome P450 1A1 OS=Liza aurata GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 47/166 (28.31%), Postives = 85/166 (51.20%), Query Frame = 1
Query:  286 GKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFDRLID--QRLKQRQERDFTES--KDMLDALLKICEDKSVE----IDINDIKHLFLV--LFAAGTDTTSSTLEWAMTELLRNPDILSKVRLELEQTIGKGNPIEESDITRLPYLQAVLKETFRLHPAVPLLL 753
            G  N +DF P+L+ L  + ++        K +++ DR I   Q++       F +   +D+ D+L+  CED+ ++    + ++D K + +V  LF AG DT S+ L W++  L+  P+I  ++  EL++ +G       SD   LP L+A + E FR    +P  +
Sbjct:  234 GSGNPADFIPILQYLPNKTMK--------KFVNINDRFISFVQKIVSEHYATFNKDNIRDITDSLIDHCEDRKLDENANVQMSDEKVVGIVNDLFGAGLDTISTALSWSVMYLVAYPEIQERLYQELKENVGLDRTPVLSDRNNLPLLEAFILEIFRHSSFLPFTI 391          
BLAST of CX297693 vs. ExPASy Swiss-Prot
Match: CP17A_PANTR (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Pan troglodytes GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 57/221 (25.79%), Postives = 102/221 (46.15%), Query Frame = 1
Query:  139 GTAIHIGQAAFGTTLNLISNTIFSIDL--ADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVLE---NLDLQGIRRRMTVYFGKMLDVFDRLIDQRLKQRQERDFTES-KDMLDALLKIC----------EDKSVEIDINDIKHLFLVLFAAGTDTTSSTLEWAMTELLRNPDILSKVRLELEQTIGKGNPIEESDITRLPYLQAVLKETFRLHPAVPLLL 753
            G +I I    F    N+IS   F+      DP     + +   N G+++   K +L D  P L+   N  L+ ++  + +         + L+++ L+  +E+  ++S  +MLD L++            +  S  +  N I      +F AG +TT+S ++W +  LL NP +  K+  E++Q +G       SD  RL  L+A ++E  RL P  P+L+
Sbjct:  162 GQSIDISFPVFVAVTNVISLICFNTSYKNGDPELNIIQNY---NEGIIDNLSKDSLVDLVPWLKIFPNKTLEKLKSHVKIR--------NDLLNKILENYKEKFRSDSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRLRPVAPMLI 371          
The following BLAST results are available for this feature:
BLAST of CX297693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
CP2C4_RABIT7.352e-1128.76Cytochrome P450 2C4 OS=Oryctolagus cuniculus GN=CY... [more]
CP1A1_OPSTA7.352e-1127.61Cytochrome P450 1A1 OS=Opsanus tau GN=cyp1a1 PE=2 ... [more]
CP17A_HUMAN7.352e-1125.79Steroid 17-alpha-hydroxylase/17,20 lyase OS=Homo s... [more]
KO1_ARATH9.603e-1129.94Ent-kaurene oxidase OS=Arabidopsis thaliana GN=KO1... [more]
CP27A_RABIT9.603e-1144.29Sterol 26-hydroxylase, mitochondrial OS=Oryctolagu... [more]
CP241_CANFA9.603e-1133.90Cytochrome P450 2C41 OS=Canis familiaris GN=CYP2C4... [more]
CP21A_BOVIN9.603e-1133.85Steroid 21-hydroxylase OS=Bos taurus GN=CYP21 PE=1... [more]
CP1A1_LIZAU9.603e-1128.31Cytochrome P450 1A1 OS=Liza aurata GN=cyp1a1 PE=2 ... [more]
CP17A_PANTR9.603e-1125.79Steroid 17-alpha-hydroxylase/17,20 lyase OS=Pan tr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06004C03SK RindPdig24 Citrus clementina cDNA clone C06004C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297693 ID=CX297693; Name=CX297693; organism=Citrus clementina; type=EST; length=754bp
GAGGGCGACACTGTGGAGAATCTTCGAAAAATATGCAACTCACATGCTTT
CTCTAGTCGCCAACTCGATGCCAATCAGCACCTTCGGCGTAAGAAAATCC
AAGATCTTCTAGCTTATGTCCAAGAAAATTGCCGTGCAGGTACAGCAATA
CATATTGGCCAAGCTGCTTTCGGCACTACGCTTAATTTGATATCCAACAC
AATTTTTTCTATTGACTTGGCTGATCCCACATCAAAAACTGCGCGAGAGT
TTAAGCAAACAAATTGGGGTATGATGGAAGAAGCTGGAAAGCCTAACTTG
TCCGATTTTTTTCCTGTGCTTGAGAATCTTGACTTGCAAGGTATAAGGCG
TCGCATGACAGTTTATTTTGGCAAGATGCTCGATGTATTTGATCGCTTGA
TTGATCAACGATTGAAGCAAAGACAAGAACGAGATTTCACCGAATCCAAA
GATATGTTAGATGCTCTTCTCAAAATTTGTGAAGACAAAAGCGTGGAGAT
TGATATAAATGATATCAAACACTTGTTTCTGGTTTTGTTTGCTGCGGGGA
CTGATACTACTTCGAGTACATTGGAATGGGCAATGACAGAACTACTTCGC
AACCCAGATATTTTATCAAAAGTCCGATTAGAGTTAGAACAAACGATTGG
CAAAGGCAATCCAATTGAGGAATCAGACATCACCCGCTTACCTTATCTAC
AAGCAGTACTCAAAGAAACCTTCAGGTTGCACCCGGCAGTTCCTCTTTTA
CTTC
back to top