CX297694

Overview
NameCX297694
Unique NameCX297694
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length471
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PER2_CUCSA (Peroxidase 2 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.118e-15
Identity = 40/63 (63.49%), Postives = 46/63 (73.02%), Query Frame = 1
Query:   13 GLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 201
            G L SDQ L STPG DT  IV  F  +Q  FF++F  SMI MGN++PLTGNQGEIR NCRR+N
Sbjct:  230 GPLTSDQVLHSTPGEDTVKIVNLFAASQNQFFESFGQSMINMGNIQPLTGNQGEIRSNCRRLN 292          
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PER1B_ARMRU (Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.379e-15
Identity = 41/68 (60.29%), Postives = 48/68 (70.59%), Query Frame = 1
Query:   10 QGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNN 210
            +GL+QSDQELFS+P A DT  +V  F      FF  FV +M RMGN+ PLTG QGEIRLNCR VN N+
Sbjct:  269 KGLIQSDQELFSSPNATDTIPLVRSFADGTQKFFNAFVEAMNRMGNITPLTGTQGEIRLNCRVVNSNS 336          
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PER1C_ARMRU (Peroxidase C1C (Fragment) OS=Armoracia rusticana GN=PRXC1C PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.174e-15
Identity = 40/68 (58.82%), Postives = 48/68 (70.59%), Query Frame = 1
Query:   10 QGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNN 210
            +GL+QSDQELFS+P A DT  +V  +      FF  FV +M RMGN+ PLTG QGEIRLNCR VN N+
Sbjct:  250 KGLIQSDQELFSSPNATDTIPLVRSYADGTQTFFNAFVEAMNRMGNITPLTGTQGEIRLNCRVVNSNS 317          
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PER2_ARMRU (Peroxidase C2 OS=Armoracia rusticana GN=PRXC2 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.198e-14
Identity = 42/70 (60.00%), Postives = 48/70 (68.57%), Query Frame = 1
Query:   10 QGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNNNI 216
            +GL+QSDQELFS+P A DT  +V  +   Q  FF  FV +MIRMGNL P TG QGEIRLNCR VN    I
Sbjct:  265 KGLIQSDQELFSSPDASDTIPLVRAYADGQGKFFDAFVEAMIRMGNLSPSTGKQGEIRLNCRVVNSKPKI 334          
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PER37_ARATH (Peroxidase 37 OS=Arabidopsis thaliana GN=PER37 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.044e-14
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 1
Query:   10 QGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNNNI 216
            +GL+QSDQELFS+P A DT  +V ++   Q  FF  F  +MIRM +L PLTG QGEIRLNCR VN  + I
Sbjct:  263 KGLIQSDQELFSSPDASDTLPLVREYADGQGKFFDAFAKAMIRMSSLSPLTGKQGEIRLNCRVVNSKSKI 332          
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PER58_ARATH (Peroxidase 58 OS=Arabidopsis thaliana GN=PER58 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.669e-14
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   10 QGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 201
            +G+++SDQ LFS+ GA T ++V  F  NQ  FF NF  SMI+MGN++ LTG +GEIR +CRRVN
Sbjct:  266 RGVIESDQILFSSTGAPTVSLVNRFAENQNEFFTNFARSMIKMGNVRILTGREGEIRRDCRRVN 329          
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PER38_ARATH (Peroxidase 38 OS=Arabidopsis thaliana GN=PER38 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.486e-14
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 1
Query:   10 QGLLQSDQELFSTP-GADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNNNI 216
            +GL+QSDQELFS+P  ADT  +V  +   Q  FF  FV ++IRM +L PLTG QGEIRLNCR VN  + I
Sbjct:  263 KGLIQSDQELFSSPDAADTLPLVRAYADGQGTFFDAFVKAIIRMSSLSPLTGKQGEIRLNCRVVNSKSKI 332          
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PER34_ARATH (Peroxidase 34 OS=Arabidopsis thaliana GN=PER34 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.325e-13
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   10 QGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNN 210
            +GL+QSDQELFS+P A DT  +V  +      FF  FV +M RMGN+ P TG QG+IRLNCR VN N+
Sbjct:  271 KGLIQSDQELFSSPNATDTIPLVRAYADGTQTFFNAFVEAMNRMGNITPTTGTQGQIRLNCRVVNSNS 338          
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PER33_ARATH (Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.325e-13
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   10 QGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNN 210
            +GL+QSDQELFS+P A DT  +V  +      FF  FV +M RMGN+ P TG QG+IRLNCR VN N+
Sbjct:  272 KGLIQSDQELFSSPNATDTIPLVRAYADGTQTFFNAFVEAMNRMGNITPTTGTQGQIRLNCRVVNSNS 339          
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PER32_ARATH (Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.730e-13
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 1
Query:   10 QGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNN 210
            +GL+Q+DQELFS+P A DT  +V ++      FF  FV +M RMGN+ PLTG QG+IR NCR VN N+
Sbjct:  270 KGLIQTDQELFSSPNATDTIPLVREYADGTQKFFNAFVEAMNRMGNITPLTGTQGQIRQNCRVVNSNS 337          
The following BLAST results are available for this feature:
BLAST of CX297694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PER2_CUCSA4.118e-1563.49Peroxidase 2 (Fragment) OS=Cucumis sativus PE=2 SV... [more]
PER1B_ARMRU5.379e-1560.29Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE... [more]
PER1C_ARMRU9.174e-1558.82Peroxidase C1C (Fragment) OS=Armoracia rusticana G... [more]
PER2_ARMRU1.198e-1460.00Peroxidase C2 OS=Armoracia rusticana GN=PRXC2 PE=3... [more]
PER37_ARATH2.044e-1457.14Peroxidase 37 OS=Arabidopsis thaliana GN=PER37 PE=... [more]
PER58_ARATH2.669e-1456.25Peroxidase 58 OS=Arabidopsis thaliana GN=PER58 PE=... [more]
PER38_ARATH3.486e-1457.14Peroxidase 38 OS=Arabidopsis thaliana GN=PER38 PE=... [more]
PER34_ARATH1.325e-1355.88Peroxidase 34 OS=Arabidopsis thaliana GN=PER34 PE=... [more]
PER33_ARATH1.325e-1355.88Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=... [more]
PER32_ARATH1.730e-1354.41Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC06004C04SK RindPdig24 Citrus clementina cDNA clone C06004C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297694 ID=CX297694; Name=CX297694; organism=Citrus clementina; type=EST; length=471bp
GAGGCTCCGCAAGGCCTTCTGCAGAGTGATCAAGAGTTGTTTTCGACTCC
TGGTGCCGATACCGCTGCCATTGTCGAGGACTTTGGGAGGAACCAGACTG
CTTTCTTTAAAAACTTTGTGATCTCAATGATAAGAATGGGCAATTTGAAA
CCACTGACAGGAAATCAAGGGGAGATTAGATTGAACTGCAGGAGGGTCAA
TGGAAACAATAATATTGCAACAAGATCATCATCATCGGAGGGTGATTTGG
TCAGCTCTTTCTAATAAGCTAGCTTGCGGCATATGCGAGAGAGTTTTTGT
GCTTAACAAACTCGAATTTAATCTTATCGTTTGGCCTGAAACATGTTATG
TGTTTTCAAATAAATTAACTATCAAACTTGAGTTTAATCTAATTTTCTTG
TCTGAAACATGCTATGTATTTTCAAATAAATTAATTAAACTTGTGTTTTT
GTGTAAAAAAAAAAAAAAAAA
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