CX297694

Overview
NameCX297694
Unique NameCX297694
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length471
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PER2_ORYSI (Peroxidase 2 OS=Oryza sativa subsp. indica GN=PRX112 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.115e-11
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1
Query:   10 QGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 201
            +GLL SDQ LF+  G  T   V +F  N  AF   F ++M++MGN+ PLTG QG+IRLNC +VN
Sbjct:  253 KGLLHSDQVLFN--GGSTDNTVRNFSSNTAAFNSAFTVAMVKMGNISPLTGTQGQIRLNCSKVN 314          
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PER72_ARATH (Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.712e-11
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 1
Query:   10 QGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 201
            +GLL SD+ LF T    +  +VE +  NQ AFF+ F  SM++MGN+ PLTG +GEIR  CRRVN
Sbjct:  271 KGLLSSDEILF-TKNKQSKELVELYAENQEAFFEQFAKSMVKMGNISPLTGAKGEIRRICRRVN 333          
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PER49_ARATH (Peroxidase 49 OS=Arabidopsis thaliana GN=PER49 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.712e-11
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 1
Query:   10 QGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 201
            +GLL SDQ LFS+    +  +V+ +  +Q  FF+ F  SMI+MGN+ PLTG+ GEIR NCR++N
Sbjct:  268 KGLLNSDQVLFSS-NEKSRELVKKYAEDQGEFFEQFAESMIKMGNISPLTGSSGEIRKNCRKIN 330          
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PER36_ARATH (Peroxidase 36 OS=Arabidopsis thaliana GN=PER36 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 6.154e-11
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 1
Query:   10 QGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 201
            +GLL SD+ LF T   +T  +V+ +  N+ AFF+ F  SM++MGN+ PLTG  GEIR  CRRVN
Sbjct:  279 RGLLSSDEILF-TQSIETMEMVKYYAENEGAFFEQFAKSMVKMGNISPLTGTDGEIRRICRRVN 341          
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PER2_ORYSJ (Peroxidase 2 OS=Oryza sativa subsp. japonica GN=PRX112 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.154e-11
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 1
Query:   10 QGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 201
            +GLL SDQ LF+  G  T   V +F  N  AF   F  +M++MGN+ PLTG QG+IRLNC +VN
Sbjct:  253 KGLLHSDQVLFN--GGSTDNTVRNFSSNTAAFNSAFTAAMVKMGNISPLTGTQGQIRLNCSKVN 314          
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PER15_ARATH (Peroxidase 15 OS=Arabidopsis thaliana GN=PER15 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.154e-11
Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   13 GLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGN 207
            GLL SD+ LFS+    +  +V+ +  +Q  FF+ F  SMI+MGN+ PLTG+ GEIR NCR++N +
Sbjct:  275 GLLNSDEVLFSS-NEQSRELVKKYAEDQEEFFEQFAESMIKMGNISPLTGSSGEIRKNCRKINNS 338          
BLAST of CX297694 vs. ExPASy Swiss-Prot
Match: PER68_ARATH (Peroxidase 68 OS=Arabidopsis thaliana GN=PER68 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.037e-11
Identity = 32/64 (50.00%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   10 QGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 201
            +GLL SDQ LF+  G  T +IV  + R+  AF+++FV +MI+MG++ PLTG+ G+IR +CRR N
Sbjct:  264 RGLLTSDQVLFN--GGSTDSIVVSYSRSVQAFYRDFVAAMIKMGDISPLTGSNGQIRRSCRRPN 325          
The following BLAST results are available for this feature:
BLAST of CX297694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PER2_ORYSI2.115e-1151.56Peroxidase 2 OS=Oryza sativa subsp. indica GN=PRX1... [more]
PER72_ARATH4.712e-1153.13Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=... [more]
PER49_ARATH4.712e-1150.00Peroxidase 49 OS=Arabidopsis thaliana GN=PER49 PE=... [more]
PER36_ARATH6.154e-1151.56Peroxidase 36 OS=Arabidopsis thaliana GN=PER36 PE=... [more]
PER2_ORYSJ6.154e-1151.56Peroxidase 2 OS=Oryza sativa subsp. japonica GN=PR... [more]
PER15_ARATH6.154e-1147.69Peroxidase 15 OS=Arabidopsis thaliana GN=PER15 PE=... [more]
PER68_ARATH8.037e-1150.00Peroxidase 68 OS=Arabidopsis thaliana GN=PER68 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC06004C04SK RindPdig24 Citrus clementina cDNA clone C06004C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297694 ID=CX297694; Name=CX297694; organism=Citrus clementina; type=EST; length=471bp
GAGGCTCCGCAAGGCCTTCTGCAGAGTGATCAAGAGTTGTTTTCGACTCC
TGGTGCCGATACCGCTGCCATTGTCGAGGACTTTGGGAGGAACCAGACTG
CTTTCTTTAAAAACTTTGTGATCTCAATGATAAGAATGGGCAATTTGAAA
CCACTGACAGGAAATCAAGGGGAGATTAGATTGAACTGCAGGAGGGTCAA
TGGAAACAATAATATTGCAACAAGATCATCATCATCGGAGGGTGATTTGG
TCAGCTCTTTCTAATAAGCTAGCTTGCGGCATATGCGAGAGAGTTTTTGT
GCTTAACAAACTCGAATTTAATCTTATCGTTTGGCCTGAAACATGTTATG
TGTTTTCAAATAAATTAACTATCAAACTTGAGTTTAATCTAATTTTCTTG
TCTGAAACATGCTATGTATTTTCAAATAAATTAATTAAACTTGTGTTTTT
GTGTAAAAAAAAAAAAAAAAA
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