CX297698

Overview
NameCX297698
Unique NameCX297698
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297698 vs. ExPASy Swiss-Prot
Match: AROF_STRCO (Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Streptomyces coelicolor GN=aroH PE=1 SV=3)

HSP 1 Score: 208.379 bits (529), Expect = 3.562e-53
Identity = 95/179 (53.07%), Postives = 126/179 (70.39%), Query Frame = 1
Query:    1 EASRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLR 537
            E +RQLD AH+EF   + NP+GIK+       E ++ IE L+P+ +PGR+T I RMGA+ +R KLP L+  V  SG  V W++DPMHGNT +A  G KTR FD +  EV+ FF+VH+  G+HPGG+H+E+TG +VTEC+GG   +  DDL  RY T CDPRLN SQSL+LAF++AE  R
Sbjct:  270 ERTRQLDHAHIEFASRIRNPIGIKLGPSTTAEEALQYIERLDPEREPGRLTFIVRMGADKIRDKLPELVEKVTASGATVAWITDPMHGNTYEAASGHKTRRFDDVLDEVKGFFEVHKSLGTHPGGIHVELTGDDVTECVGGGDEIFVDDLHQRYETACDPRLNRSQSLDLAFLVAEMYR 448          
BLAST of CX297698 vs. ExPASy Swiss-Prot
Match: AROF_NEUCR (Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neurospora crassa GN=aro-8 PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 3.022e-44
Identity = 83/184 (45.11%), Postives = 123/184 (66.85%), Query Frame = 1
Query:    1 EASRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRS--GQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRR 546
            + +RQ+D AHVE+ +G+ANP+G+K+      ++L+ ++  LNP  +PG++T+ITR GA+ +   LP  IR V  S   + V W  DPMHGNT     G+KTR F  I +E++    +H++E S+ GG+HLE+TG  VTEC+GG   +  DDLS+ Y + CDPRLN  Q+LELAF++A+  R+ R
Sbjct:  285 DRTRQIDHAHVEYFRGIANPIGVKIGPSTPTSDLLPMLRTLNPNREPGKVTLITRYGADKVASLLPAHIRTVESSEYARTVVWQCDPMHGNTQSVSGGIKTRKFSDIFSELQQTLRIHKEEKSYLGGMHLELTGDAVTECLGGGAGLDEDDLSTNYTSFCDPRLNEKQALELAFLVADHYRQER 468          
BLAST of CX297698 vs. ExPASy Swiss-Prot
Match: AROF_STRLI (Phospho-2-dehydro-3-deoxyheptonate aldolase (Fragment) OS=Streptomyces lividans PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.927e-39
Identity = 76/145 (52.41%), Postives = 102/145 (70.34%), Query Frame = 1
Query:  103 VKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLR 537
            ++ IE L+P+ +PGR+T I RMGA+ +R KLP L+         V W++DPMHGNT +A    KTR FD +  EV+ FF+VH+  G+HPGG+H+E+TG +VTEC+GG   +  DDL  RY T CDPRLN SQSL+LAF++AE  R
Sbjct:    1 LQYIERLDPEREPGRLTFIVRMGADKIRDKLPELVERSPPPAT-VAWITDPMHGNTYEAAPVHKTRRFDDVLDEVKGFFEVHKSLGTHPGGIHVELTGDDVTECVGGGDEIFVDDLHQRYETACDPRLNRSQSLDLAFLVAEMYR 144          
BLAST of CX297698 vs. ExPASy Swiss-Prot
Match: PHZC_PSEFL (Probable phospho-2-dehydro-3-deoxyheptonate aldolase OS=Pseudomonas fluorescens GN=phzC PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.564e-35
Identity = 77/168 (45.83%), Postives = 103/168 (61.31%), Query Frame = 1
Query:    1 EASRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSL 504
            E +RQL GAHV  L  V NP+  KV   +  ++L+ L E L+P+ +PGR+T+I RMGA  +  +LP L+ AVRR+G  + W+SDPMHGNTI APCG KTR   +I  E+ AF       G   GG+HLE T  +V+EC   S       + S Y + CDPRLN  Q++
Sbjct:  218 ERTRQLTGAHVALLSEVLNPVACKVGPDITQDQLLSLCERLDPRREPGRLTLIARMGAHKVADRLPPLVEAVRRAGHKIIWLSDPMHGNTIVAPCGNKTRMVQTITDEITAFKHAVVSAGGVAGGLHLETTPDDVSEC--ASDAAGLGQVGSHYKSLCDPRLNPWQAI 383          
BLAST of CX297698 vs. ExPASy Swiss-Prot
Match: PHZC_PSECL (Probable phospho-2-dehydro-3-deoxyheptonate aldolase OS=Pseudomonas chlororaphis GN=phzC PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.662e-34
Identity = 75/168 (44.64%), Postives = 104/168 (61.90%), Query Frame = 1
Query:    1 EASRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSL 504
            E +RQL GAHV  L  V NP+  KV   +  ++L+ L E L+ + +PGR+T+I RMGA+ +  +LP L+ AVR++G  + W+SDPMHGNTI APCG KTR   +I  E+ AF       G    G+HLE T  +V+EC   S       ++SRY + CDPRLN  Q++
Sbjct:  218 ERTRQLTGAHVTLLSEVLNPVACKVGPDITQDQLLSLCERLDAKREPGRLTLIARMGAQKVAERLPPLVEAVRQAGHKIIWLSDPMHGNTIVAPCGNKTRMVQAITEEIAAFKHAVTSAGGVAAGLHLETTPDDVSEC--ASDAAGLHQVASRYKSLCDPRLNPWQAI 383          
The following BLAST results are available for this feature:
BLAST of CX297698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
AROF_STRCO3.562e-5353.07Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Str... [more]
AROF_NEUCR3.022e-4445.11Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neu... [more]
AROF_STRLI2.927e-3952.41Phospho-2-dehydro-3-deoxyheptonate aldolase (Fragm... [more]
PHZC_PSEFL2.564e-3545.83Probable phospho-2-dehydro-3-deoxyheptonate aldola... [more]
PHZC_PSECL1.662e-3444.64Probable phospho-2-dehydro-3-deoxyheptonate aldola... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06004C08SK RindPdig24 Citrus clementina cDNA clone C06004C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297698 ID=CX297698; Name=CX297698; organism=Citrus clementina; type=EST; length=762bp
GAGGCGTCCAGGCAGCTGGATGGTGCACATGTTGAGTTTTTGAAAGGTGT
AGCAAATCCCCTTGGCATTAAGGTCAGTGATAAGATGGATCCTAATGAGC
TAGTGAAGCTTATTGAGATTTTGAATCCTCAGAATAAACCGGGGAGGATA
ACTATTATCACTAGAATGGGTGCTGAGAACATGAGAGTGAAGCTTCCTCA
TCTAATTAGGGCAGTCCGCCGCTCTGGCCAAATTGTTACATGGGTCAGTG
ACCCTATGCATGGTAACACCATCAAGGCTCCCTGCGGCCTGAAAACTCGT
CCCTTCGATTCTATCAGGGCTGAAGTGAGAGCATTCTTTGATGTGCATGA
GCAAGAAGGAAGTCACCCGGGAGGAGTACATTTGGAGATGACAGGCCAGA
ATGTGACAGAGTGCATCGGTGGGTCAAGAACAGTGACATTCGACGACTTG
AGTTCACGCTACCACACCCACTGTGACCCTAGGCTTAATGCTTCACAGTC
ACTTGAGCTTGCCTTCATCATTGCCGAGCGCCTCAGAAAGAGGAGGATTA
GCTCACAGCAACCTCTTGCCTCTTCGTCTCTCCTGTAGAATGGCCTGAGT
ACTGCTGGCATATATTATTATTTTTCTTGAAGTTTAGCAGCTGTGCTAGT
ATTTTTAATTTTGGTTTTTTGATTTAATTTATGTCATGTACTGAATGTGT
ATATTAAAAGGACATGATGGCTTTGAGACTTAGGAACAAGGAATAAAAAT
ATGGGATTTATG
back to top