CX297701

Overview
NameCX297701
Unique NameCX297701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: MCR1_CANGA (NADH-cytochrome b5 reductase 2 OS=Candida glabrata GN=MCR1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 41/115 (35.65%), Postives = 62/115 (53.91%), Query Frame = 3
Query:   30 DKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTI-YYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAH-------------LEALGYTSEMLFQF 332
            DKTK++L Y + T  DILLK+ELD    KYP+Q  I Y+V       ++G  GF++K+ +  + P P    QV  CGPPP   +++               L+ LGY+ + +F+F
Sbjct:  184 DKTKINLFYGSKTPSDILLKKELDDLQKKYPEQLNIQYFVDKDDTGKFDGNKGFITKDFLAKNAPGPKEKTQVFVCGPPPFMDSLSGQKKSPMEQGDLTGALKDLGYSQDQVFKF 298          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NIA_CUCMA (Nitrate reductase [NADH] OS=Cucurbita maxima PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 38/102 (37.25%), Postives = 63/102 (61.76%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNK-AMAAHLEALGYTSE 317
            +++P D+T+++++YAN T +DILL++ELD +A K       Y V     E W   VGF+++ +++ H PA A D   L CGPP M + A+  +LE + Y ++
Sbjct:  811 LKDPEDETEMYVVYANRTEDDILLRDELDTWAKKNQRLKVWYVVQESIREGWEYSVGFITENILREHIPAAAEDTLALACGPPAMIQFAVQPNLEKMNYDTK 912          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NIA3_MAIZE (Nitrate reductase [NADH] 3 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = 3
Query:   21 EPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP--ESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPM 269
            +P DKT++HL+YAN T +DILL+ ELD +AA+YP++  ++YV++Q    + W   VG V++ +++   P        L CGPP M
Sbjct:  782 QPEDKTEMHLVYANRTEDDILLRAELDRWAAEYPERLKVWYVVSQVKRLDEWKYSVGIVTEAVLRDDVPEARDGTLALLCGPPSM 866          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NIA_BETVE (Nitrate reductase [NAD(P)H] OS=Betula verrucosa GN=NIA1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 35/102 (34.31%), Postives = 61/102 (59.80%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPM-NKAMAAHLEALGYTSE 317
            +++P D+T++ ++YAN T +DILL+EELD +A K+      Y V     E W   VG++ + +++ H P  + D+  L CG P M  +A+  +LE + Y ++
Sbjct:  791 LKDPEDETEMFVVYANRTEDDILLREELDDWAKKHEKLKVWYVVKESKREGWEYSVGYIRESILREHIPEGSDDVLALACGAPSMIEEAVRLNLEKMNYDTK 892          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NIA7_HORVU (Nitrate reductase [NAD(P)H] OS=Hordeum vulgare GN=NAR-7 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 38/101 (37.62%), Postives = 65/101 (64.36%), Query Frame = 3
Query:   21 EPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLN---QPPESWNGGVGFVSKEMIQTHCPAPA-SDIQVLRCGPPPMNK-AMAAHLEALGY 308
            +P+D T++HL+YAN T +D+LL+EE+D +AA  P +  ++YV++   +P ++W  GVG V +++++ H P     +   L CGPP M +  +   LE +GY
Sbjct:  782 QPDDTTEMHLVYANRTEDDMLLREEIDRWAAANPARLKVWYVVSKVGRPEDAWEYGVGRVDEQVLREHLPLGGDGETLALVCGPPAMLECTVRPGLEKMGY 882          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NIA2_MAIZE (Nitrate reductase [NAD(P)H] (Fragment) OS=Zea mays GN=NAR PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 37/98 (37.76%), Postives = 59/98 (60.20%), Query Frame = 3
Query:   21 EPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPE-SWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNK-AMAAHLEALGY 308
            +P+D T++HL+YAN T  D+LL+EE+D        +  ++YV+++ PE  W  GVG V + +++ H P   S+   L CGPP M +  +   LE +GY
Sbjct:  125 QPDDDTEMHLVYANRTDHDMLLREEIDRAWLPRTRRLKVWYVVSKVPEDGWEYGVGRVDEHVMREHLPLGDSETIALVCGPPAMIECTVRPGLEKMGY 222          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NIA_EMENI (Nitrate reductase [NADPH] OS=Emericella nidulans GN=niaD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKY--PDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTSEMLFQF 332
            +++  D+TK  ++  N   EDILLK ELD F A     ++  I + L +  ESW G  G + +E+I+ H   P  +  VL CGP  M KA    L +LG+  E L  F
Sbjct:  766 MQDEQDETKCVMLDGNRLEEDILLKNELDEFEALAGKKEKCKIVHTLTKGSESWTGRRGRIDEELIRQHAGTPDRETMVLVCGPEAMEKASKKILLSLGWKEENLHYF 873          
The following BLAST results are available for this feature:
BLAST of CX297701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
MCR1_CANGA2.202e-1435.65NADH-cytochrome b5 reductase 2 OS=Candida glabrata... [more]
NIA_CUCMA4.905e-1437.25Nitrate reductase [NADH] OS=Cucurbita maxima PE=2 ... [more]
NIA3_MAIZE1.427e-1341.18Nitrate reductase [NADH] 3 OS=Zea mays PE=3 SV=1[more]
NIA_BETVE3.179e-1334.31Nitrate reductase [NAD(P)H] OS=Betula verrucosa GN... [more]
NIA7_HORVU4.152e-1337.62Nitrate reductase [NAD(P)H] OS=Hordeum vulgare GN=... [more]
NIA2_MAIZE1.336e-1137.76Nitrate reductase [NAD(P)H] (Fragment) OS=Zea mays... [more]
NIA_EMENI8.658e-1137.04Nitrate reductase [NADPH] OS=Emericella nidulans G... [more]

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Properties
Property NameValue
Genbank descriptionC06004C11SK RindPdig24 Citrus clementina cDNA clone C06004C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297701 ID=CX297701; Name=CX297701; organism=Citrus clementina; type=EST; length=711bp
GAGGCTAGAGCCATATTAGAGAACCAAATGACAAGACAAAGGTGCACCTC
ATTTATGCCAATGTTACATATGAGGACATTCTTTTAAAGGAAGAATTGGA
TGGATTTGCGGCGAAGTACCCTGATCAATTCACAATCTACTATGTGTTGA
ATCAGCCTCCTGAATCGTGGAATGGTGGTGTTGGCTTTGTCTCAAAGGAA
ATGATTCAAACCCATTGTCCCGCACCTGCTTCTGATATTCAGGTTCTGAG
ATGTGGTCCACCACCAATGAACAAGGCCATGGCTGCTCACCTCGAGGCAC
TTGGATATACTTCAGAAATGCTGTTCCAGTTCTAATCACTTCCATAAGGT
TGTCCAATTATTTGGACTGATATTCGTCACTCCTATTCGGTCCACATAAA
GAACTTTTTTACATCTCTTTTAAGCTGTATTTTGTTTCTCCTGTGACTAA
AGAAGCCGATGAAACCGGAGCATGGATTTTGTAATTGATCTTTTGCTTTA
ACCTATAAAAACAAATCTCCATGAGGTTTTTCAAATTAGGGATTTGTAGT
GCTATAGCTTGGAAACTGTAGAAAATAGGTTACAATAACCTAAATCAGGG
CAAGATTGGCCCTGATAGCCATTACCAATTATTGCACCATTGATACTTGA
AAATTTGTTGATGGCAAGATAATACTTTGATGACCTTAAAAAAAAAAAAA
AAAAAAAAAAA
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