CX297701

Overview
NameCX297701
Unique NameCX297701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NCB5R_CRYNE (NADH-cytochrome b5 reductase 1 OS=Cryptococcus neoformans GN=CBR1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.426e-23
Identity = 54/107 (50.47%), Postives = 68/107 (63.55%), Query Frame = 3
Query:    9 SHIREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAP-------ASDIQVLRCGPPPMNKAMAAHLEALGY 308
            S I+ P DKT++ LIYAN+  +DILLK+E+D   AK   +F + YVLN PPE W GGVGFV+KEMI+   P+            +VL CGPPPM  AM  HL  +GY
Sbjct:  172 SSIKTPGDKTRLSLIYANIQEDDILLKKEIDELQAKSNGRFDVKYVLNNPPEGWTGGVGFVTKEMIEEAMPSSGVGSANHGEGHKVLMCGPPPMITAMKGHLAQIGY 278          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NCB5R_AJECN (NADH-cytochrome b5 reductase 1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=CBR1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.426e-23
Identity = 54/94 (57.45%), Postives = 66/94 (70.21%), Query Frame = 3
Query:   27 NDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGY 308
            ND T+V LI+ANV  +DILLK+ELD  A K  D F ++YVLN PPE W GGVGFV+ +MI+   PA A D +VL CGPPPM  AM    E+LG+
Sbjct:  202 NDTTQVDLIFANVNPDDILLKDELDQLA-KEDDGFRVFYVLNNPPEGWEGGVGFVTPDMIRAKLPAAAPDTKVLICGPPPMVSAMKKATESLGF 294          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NB5R2_HUMAN (NADH-cytochrome b5 reductase 2 OS=Homo sapiens GN=CYB5R2 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.426e-23
Identity = 48/106 (45.28%), Postives = 74/106 (69.81%), Query Frame = 3
Query:   18 REPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMA-AHLEALGYTSEMLFQF 332
            ++P+D+T++ LI+AN T EDIL+++EL+  A  +PDQF ++Y L++PP  W    GFV+ +MI+ H P PA    +L CGPPP+ +  A  +LE LGYT +M+F +
Sbjct:  171 KDPSDRTRMSLIFANQTEEDILVRKELEEIARTHPDQFNLWYTLDRPPIGWKYSSGFVTADMIKEHLPPPAKSTLILVCGPPPLIQTAAHPNLEKLGYTQDMIFTY 276          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NCB5R_NEUCR (NADH-cytochrome b5 reductase 1 OS=Neurospora crassa GN=cbr-1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.549e-23
Identity = 50/97 (51.55%), Postives = 69/97 (71.13%), Query Frame = 3
Query:   18 REPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGY 308
            R   D+T+V LI+ANVT +DILLKE+LD   A+      ++YVL++PPE W GGVGFV++EM++   P PASD+++L CGPPPM   +    EALG+
Sbjct:  199 RAAGDRTEVDLIFANVTAQDILLKEDLDALVAQ-DKGIRVHYVLDRPPEGWTGGVGFVTQEMVEKLLPKPASDVKILLCGPPPMISGLKKATEALGF 294          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NB5R2_XENLA (NADH-cytochrome b5 reductase 2 OS=Xenopus laevis GN=cyb5r2 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 49/106 (46.23%), Postives = 71/106 (66.98%), Query Frame = 3
Query:   18 REPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNK-AMAAHLEALGYTSEMLFQF 332
            ++PND TK +LI+AN T +DILL+ EL+  A  +P+QF ++Y L++PP+ W  G GFV+ +MI+ H P P+ D+ VL CGPPPM + A   +L  LGY     F +
Sbjct:  191 QDPNDNTKCYLIFANQTEDDILLRYELETVAKSHPEQFKLWYTLDRPPQGWKYGSGFVTADMIKEHLPPPSEDVLVLMCGPPPMIQFACQDNLTKLGYPEAGRFAY 296          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NB5R1_MOUSE (NADH-cytochrome b5 reductase 1 OS=Mus musculus GN=Cyb5r1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 47/107 (43.93%), Postives = 72/107 (67.29%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPM-NKAMAAHLEALGYTSEMLFQF 332
            ++ P D T+  L++AN T  DI+L+E+L+   A+YP++F +++ L+ PPE W    GFV+ +MIQ H PAPA D+ +L CGPPPM   A   +L+ LGY+ +M F +
Sbjct:  199 LKVPEDPTQCFLLFANQTERDIILREDLEELQAQYPNRFKLWFTLDSPPEDWTYSKGFVTADMIQEHLPAPAEDVLLLLCGPPPMVQLACHPNLDKLGYSQKMRFTY 305          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: MCR1_DEBHA (NADH-cytochrome b5 reductase 2 OS=Debaryomyces hansenii GN=MCR1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 51/118 (43.22%), Postives = 72/118 (61.02%), Query Frame = 3
Query:   18 REPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMA-------------AHLEALGYTSEMLFQF 332
            + P DKTKV+L Y N+T +DIL+K+ELD  A K+ DQ  + Y L++ PE+WNG  G++SKE +Q+  P P  D +V  CGPP + KA++               L  LGYT E +F+F
Sbjct:  182 KNPEDKTKVNLFYGNLTEKDILIKKELDTIAEKHKDQVNVVYFLDKAPENWNGETGYISKEFLQSKLPGPGKDNKVFVCGPPGLYKALSGPKKSPTDQGEVEGALADLGYTKENVFKF 299          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NCB5R_LACBS (NADH-cytochrome b5 reductase 1 OS=Laccaria bicolor (strain S238N-H82) GN=MCR1.1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 51/99 (51.52%), Postives = 66/99 (66.67%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAP-ASDIQVLRCGPPPMNKAMAAHLEALGY 308
            ++ P D+T + LIYANV  EDILL+ ELD  A  Y  +F ++YVLN PP  W GGVGFV+KE I+   P P  S+ ++L CGPPPM  AM  +LE + Y
Sbjct:  194 LQNPPDRTNITLIYANVNEEDILLRAELDALAMGYESRFNLFYVLNNPPSGWTGGVGFVTKEHIKDLLPNPNESNSKILICGPPPMVTAMKKNLEEIKY 292          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NB5R2_XENTR (NADH-cytochrome b5 reductase 2 OS=Xenopus tropicalis GN=cyb5r2 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 49/106 (46.23%), Postives = 70/106 (66.04%), Query Frame = 3
Query:   18 REPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNK-AMAAHLEALGYTSEMLFQF 332
            ++PND TK  LI+AN T +DILL+ EL+  A  +P+QF ++Y L++PP+ W  G GFV+ +MI+ H P P+ D+ VL CGPPPM + A   +L  LGY     F +
Sbjct:  199 QDPNDNTKCSLIFANQTEDDILLRYELETVAKSHPEQFKLWYTLDRPPQGWKYGAGFVTADMIKEHLPPPSEDVVVLMCGPPPMIQFACQDNLTKLGYPEAGRFAY 304          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: MCR1_BOTFB (NADH-cytochrome b5 reductase 2 OS=Botryotinia fuckeliana (strain B05.10) GN=mcr1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 53/117 (45.30%), Postives = 75/117 (64.10%), Query Frame = 3
Query:   24 PNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASD-IQVLRCGPPPMNKA-------------MAAHLEALGYTSEMLFQF 332
            P DKTKV L++ANVT EDILLK E +     YP +F  +YVL+ PP+SW+GG GFV+KE+++T  P P ++ ++V  CGPP M KA             +A  L+ LGY+ E +++F
Sbjct:  230 PADKTKVTLVFANVTEEDILLKREFEDLENTYPQRFRAFYVLDNPPKSWSGGKGFVNKELLKTVLPEPKTENVKVFVCGPPGMYKAISGPKVSPSDQGELAGILKELGYSKEQVYKF 346          
The following BLAST results are available for this feature:
BLAST of CX297701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
NCB5R_CRYNE4.426e-2350.47NADH-cytochrome b5 reductase 1 OS=Cryptococcus neo... [more]
NCB5R_AJECN4.426e-2357.45NADH-cytochrome b5 reductase 1 OS=Ajellomyces caps... [more]
NB5R2_HUMAN4.426e-2345.28NADH-cytochrome b5 reductase 2 OS=Homo sapiens GN=... [more]
NCB5R_NEUCR7.549e-2351.55NADH-cytochrome b5 reductase 1 OS=Neurospora crass... [more]
NB5R2_XENLA2.869e-2246.23NADH-cytochrome b5 reductase 2 OS=Xenopus laevis G... [more]
NB5R1_MOUSE2.869e-2243.93NADH-cytochrome b5 reductase 1 OS=Mus musculus GN=... [more]
MCR1_DEBHA2.869e-2243.22NADH-cytochrome b5 reductase 2 OS=Debaryomyces han... [more]
NCB5R_LACBS3.747e-2251.52NADH-cytochrome b5 reductase 1 OS=Laccaria bicolor... [more]
NB5R2_XENTR3.747e-2246.23NADH-cytochrome b5 reductase 2 OS=Xenopus tropical... [more]
MCR1_BOTFB3.747e-2245.30NADH-cytochrome b5 reductase 2 OS=Botryotinia fuck... [more]

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Properties
Property NameValue
Genbank descriptionC06004C11SK RindPdig24 Citrus clementina cDNA clone C06004C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297701 ID=CX297701; Name=CX297701; organism=Citrus clementina; type=EST; length=711bp
GAGGCTAGAGCCATATTAGAGAACCAAATGACAAGACAAAGGTGCACCTC
ATTTATGCCAATGTTACATATGAGGACATTCTTTTAAAGGAAGAATTGGA
TGGATTTGCGGCGAAGTACCCTGATCAATTCACAATCTACTATGTGTTGA
ATCAGCCTCCTGAATCGTGGAATGGTGGTGTTGGCTTTGTCTCAAAGGAA
ATGATTCAAACCCATTGTCCCGCACCTGCTTCTGATATTCAGGTTCTGAG
ATGTGGTCCACCACCAATGAACAAGGCCATGGCTGCTCACCTCGAGGCAC
TTGGATATACTTCAGAAATGCTGTTCCAGTTCTAATCACTTCCATAAGGT
TGTCCAATTATTTGGACTGATATTCGTCACTCCTATTCGGTCCACATAAA
GAACTTTTTTACATCTCTTTTAAGCTGTATTTTGTTTCTCCTGTGACTAA
AGAAGCCGATGAAACCGGAGCATGGATTTTGTAATTGATCTTTTGCTTTA
ACCTATAAAAACAAATCTCCATGAGGTTTTTCAAATTAGGGATTTGTAGT
GCTATAGCTTGGAAACTGTAGAAAATAGGTTACAATAACCTAAATCAGGG
CAAGATTGGCCCTGATAGCCATTACCAATTATTGCACCATTGATACTTGA
AAATTTGTTGATGGCAAGATAATACTTTGATGACCTTAAAAAAAAAAAAA
AAAAAAAAAAA
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