CX297701

Overview
NameCX297701
Unique NameCX297701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NB5R1_RAT (NADH-cytochrome b5 reductase 1 OS=Rattus norvegicus GN=Cyb5r1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22
Identity = 47/107 (43.93%), Postives = 72/107 (67.29%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPM-NKAMAAHLEALGYTSEMLFQF 332
            ++ P D T+  L++AN T +DI+L+E+L+   A+YP +F +++ L+ PPE W    GFV+ +MIQ H PAPA D+ +L CGPPPM   A   +L+ LGY+ +M F +
Sbjct:  199 LKVPEDPTQCFLLFANQTEKDIILREDLEELQAQYPIRFKLWFTLDYPPEDWTYSKGFVTADMIQEHLPAPAEDVLLLLCGPPPMVQLACHPNLDKLGYSQKMRFTY 305          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: MCR1_SCLS1 (NADH-cytochrome b5 reductase 2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=mcr1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.090e-21
Identity = 52/117 (44.44%), Postives = 74/117 (63.25%), Query Frame = 3
Query:   24 PNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASD-IQVLRCGPPPMNKA-------------MAAHLEALGYTSEMLFQF 332
            P DKTKV L++ANVT EDILLK E +     YP +F  +YVL+ PP+SW GG GF++KE+++T  P P S+ I++  CGPP M KA             +A  L+ LGY+ + +++F
Sbjct:  229 PADKTKVTLVFANVTEEDILLKREFEDLENTYPQRFRAFYVLDNPPKSWKGGKGFINKELLKTVLPEPKSENIKLFVCGPPGMYKAISGGKVSPSDQGELAGILKELGYSKDQVYKF 345          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NCB5R_SCHPO (NADH-cytochrome b5 reductase 1 OS=Schizosaccharomyces pombe GN=cbr1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.859e-21
Identity = 47/93 (50.54%), Postives = 68/93 (73.12%), Query Frame = 3
Query:   30 DKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGY 308
            D T++ L+YANV+  DI+L++E+D  A K P +FT++YVLN PPE+W G VGFV++E+I+ H PAP+ + +VL CGP PM  ++     ALGY
Sbjct:  194 DPTEITLLYANVSEGDIVLRDEIDALAKKDP-RFTVHYVLNNPPENWKGSVGFVTQELIKAHFPAPSPETKVLICGPTPMVNSLREATVALGY 285          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: MCR1_ASPTN (NADH-cytochrome b5 reductase 2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=mcr1 PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.859e-21
Identity = 49/119 (41.18%), Postives = 75/119 (63.03%), Query Frame = 3
Query:   18 REPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASD-IQVLRCGPPPMNKAMAAH-------------LEALGYTSEMLFQF 332
            + P DKTKV L+Y NV+ +DILLK+EL+     YP +F  +YVL+ PP+ W GG G++SKE+++T  P P  + I++  CGPP + KA++ +             L+ LGY+ E +F+F
Sbjct:  201 KNPEDKTKVTLVYGNVSEQDILLKKELEELENTYPQRFKAFYVLDNPPKEWTGGKGYISKELLKTVLPEPKEENIKIFVCGPPGLYKAISGNKVSPKDQGELTGILKELGYSQEQVFKF 319          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NIA1_ORYSJ (Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. japonica GN=NIA1 PE=2 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 2.429e-21
Identity = 48/100 (48.00%), Postives = 71/100 (71.00%), Query Frame = 3
Query:   21 EPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQ---PPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNK-AMAAHLEALGY 308
            +P D T++HL+YAN T +DILL++ELD +AA+YPD+  ++YV++Q   P E W  GVGFV++E+++ H P    D   L CGPPPM K A++ +LE + Y
Sbjct:  808 QPEDTTEMHLVYANRTEDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYGVGFVTEEVLREHVPEGGDDTLALACGPPPMIKFAVSPNLEKMKY 907          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NB5R2_CHICK (NADH-cytochrome b5 reductase 2 OS=Gallus gallus GN=CYB5R2 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.172e-21
Identity = 45/105 (42.86%), Postives = 68/105 (64.76%), Query Frame = 3
Query:   21 EPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNK-AMAAHLEALGYTSEMLFQF 332
            +P D TK +L++AN T +DILL+ EL+  A ++PDQ  ++Y L++PP+ W    GFV+ +MI+TH P P  +  +L CGPPPM + A   +L+ LGY     F +
Sbjct:  200 DPKDSTKCYLLFANQTEKDILLRAELEDIAKRHPDQVRLWYTLDRPPQDWKYSSGFVTADMIKTHLPPPGGETLILMCGPPPMIQFACQPNLDKLGYPKSSTFSY 304          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NB5R1_HUMAN (NADH-cytochrome b5 reductase 1 OS=Homo sapiens GN=CYB5R1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.172e-21
Identity = 45/107 (42.06%), Postives = 72/107 (67.29%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPM-NKAMAAHLEALGYTSEMLFQF 332
            ++ P D T+  L++AN T +DI+L+E+L+   A+YP++F +++ L+ PP+ W    GFV+ +MI+ H PAP  D+ VL CGPPPM   A   +L+ LGY+ +M F +
Sbjct:  199 LKVPEDPTQCFLLFANQTEKDIILREDLEELQARYPNRFKLWFTLDHPPKDWAYSKGFVTADMIREHLPAPGDDVLVLLCGPPPMVQLACHPNLDKLGYSQKMRFTY 305          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NCB5R_VANPO (NADH-cytochrome b5 reductase 1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=CBR1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.142e-21
Identity = 48/95 (50.53%), Postives = 65/95 (68.42%), Query Frame = 3
Query:   24 PNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGY 308
            P DKTKV  IY NV   DILL+++LD FAA  P Q TI+Y+L++P E+W GG G+V+ E+++   PAPA  +Q+L CGP PM  A+     ALG+
Sbjct:  175 PKDKTKVTFIYGNVEEIDILLRDDLDKFAASKPGQITIHYLLDKPSENWKGGSGYVTPELMKEKLPAPADGVQLLVCGPLPMVSAIKRSAVALGF 269          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NB5R1_BOVIN (NADH-cytochrome b5 reductase 1 OS=Bos taurus GN=CYB5R1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.142e-21
Identity = 46/108 (42.59%), Postives = 74/108 (68.52%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAH--LEALGYTSEMLFQF 332
            +++P D T+  L++AN T +DI+L+E+L+   A++P +F +++ L+ PPE W    GFVS +MI+ H PAP  D+ +L CGPPPM + +A H  L+ LGY+ +M F +
Sbjct:  199 LKDPEDPTQCFLLFANQTEKDIILREDLEELQARHPGRFKLWFTLDHPPEGWAYSKGFVSVDMIREHLPAPGEDVLLLLCGPPPMVQ-LACHPSLDKLGYSPKMRFTY 305          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NB5R2_MOUSE (NADH-cytochrome b5 reductase 2 OS=Mus musculus GN=Cyb5r2 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.228e-21
Identity = 48/105 (45.71%), Postives = 71/105 (67.62%), Query Frame = 3
Query:   18 REPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAH--LEALGYTSEMLF 326
            ++ +D+T++ L++AN T EDILL++EL+  A  +  QF ++Y L++PP  W    GFVS +MI+ H P P  D  +L CGPPP+ +A AAH  LE L YT +M+F
Sbjct:  171 KDTSDETRMSLLFANQTEEDILLRKELEEVATTHHKQFNLWYTLDRPPSDWKYSSGFVSADMIKEHLPPPGEDTLILVCGPPPLIQA-AAHPSLEQLSYTKDMIF 274          
The following BLAST results are available for this feature:
BLAST of CX297701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
NB5R1_RAT8.347e-2243.93NADH-cytochrome b5 reductase 1 OS=Rattus norvegicu... [more]
MCR1_SCLS11.090e-2144.44NADH-cytochrome b5 reductase 2 OS=Sclerotinia scle... [more]
NCB5R_SCHPO1.859e-2150.54NADH-cytochrome b5 reductase 1 OS=Schizosaccharomy... [more]
MCR1_ASPTN1.859e-2141.18NADH-cytochrome b5 reductase 2 OS=Aspergillus terr... [more]
NIA1_ORYSJ2.429e-2148.00Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. ... [more]
NB5R2_CHICK3.172e-2142.86NADH-cytochrome b5 reductase 2 OS=Gallus gallus GN... [more]
NB5R1_HUMAN3.172e-2142.06NADH-cytochrome b5 reductase 1 OS=Homo sapiens GN=... [more]
NCB5R_VANPO4.142e-2150.53NADH-cytochrome b5 reductase 1 OS=Vanderwaltozyma ... [more]
NB5R1_BOVIN4.142e-2142.59NADH-cytochrome b5 reductase 1 OS=Bos taurus GN=CY... [more]
NB5R2_MOUSE9.228e-2145.71NADH-cytochrome b5 reductase 2 OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC06004C11SK RindPdig24 Citrus clementina cDNA clone C06004C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297701 ID=CX297701; Name=CX297701; organism=Citrus clementina; type=EST; length=711bp
GAGGCTAGAGCCATATTAGAGAACCAAATGACAAGACAAAGGTGCACCTC
ATTTATGCCAATGTTACATATGAGGACATTCTTTTAAAGGAAGAATTGGA
TGGATTTGCGGCGAAGTACCCTGATCAATTCACAATCTACTATGTGTTGA
ATCAGCCTCCTGAATCGTGGAATGGTGGTGTTGGCTTTGTCTCAAAGGAA
ATGATTCAAACCCATTGTCCCGCACCTGCTTCTGATATTCAGGTTCTGAG
ATGTGGTCCACCACCAATGAACAAGGCCATGGCTGCTCACCTCGAGGCAC
TTGGATATACTTCAGAAATGCTGTTCCAGTTCTAATCACTTCCATAAGGT
TGTCCAATTATTTGGACTGATATTCGTCACTCCTATTCGGTCCACATAAA
GAACTTTTTTACATCTCTTTTAAGCTGTATTTTGTTTCTCCTGTGACTAA
AGAAGCCGATGAAACCGGAGCATGGATTTTGTAATTGATCTTTTGCTTTA
ACCTATAAAAACAAATCTCCATGAGGTTTTTCAAATTAGGGATTTGTAGT
GCTATAGCTTGGAAACTGTAGAAAATAGGTTACAATAACCTAAATCAGGG
CAAGATTGGCCCTGATAGCCATTACCAATTATTGCACCATTGATACTTGA
AAATTTGTTGATGGCAAGATAATACTTTGATGACCTTAAAAAAAAAAAAA
AAAAAAAAAAA
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