CX297701

Overview
NameCX297701
Unique NameCX297701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: MCR1_PHANO (NADH-cytochrome b5 reductase 2 OS=Phaeosphaeria nodorum GN=MCR1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.228e-21
Identity = 47/120 (39.17%), Postives = 74/120 (61.67%), Query Frame = 3
Query:   18 REPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAP--ASDIQVLRCGPPPMNKAMA-------------AHLEALGYTSEMLFQF 332
            + P DKTKV L++ N++ EDILLK+E +     YP +F  +YVL+ PPESW GG GF++KE+++T  P P     +++  CGPP M KA++              +L+ LGY+ + +++F
Sbjct:  217 KNPEDKTKVTLVFGNISEEDILLKKEWEHLENTYPQRFRAFYVLDNPPESWQGGKGFITKELLKTVLPEPKEGEKVKIFVCGPPGMYKAISGGKKSPSDQGELDGYLKELGYSKDQVYKF 336          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: MCR1_EMENI (NADH-cytochrome b5 reductase 2 OS=Emericella nidulans GN=mcr1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.685e-20
Identity = 47/119 (39.50%), Postives = 72/119 (60.50%), Query Frame = 3
Query:   18 REPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASD-IQVLRCGPPPMNKAMAAH-------------LEALGYTSEMLFQF 332
            + P DKTKV L++ NV+ EDILLK E +     YP +F  +YVL+ PPE W GG G+++KE+++T  P P  + I++  CGPP M KA++               L+ LGY+ + +++F
Sbjct:  204 KNPEDKTKVTLVFGNVSEEDILLKREFEDLENTYPQRFRAFYVLDNPPEGWTGGKGYITKELLKTVLPEPKEENIKIFVCGPPGMYKAISGPKVSPKDQGELTGILKELGYSKDQVYKF 322          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: MCR1_COCIM (NADH-cytochrome b5 reductase 2 OS=Coccidioides immitis GN=MCR1 PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.982e-20
Identity = 48/117 (41.03%), Postives = 73/117 (62.39%), Query Frame = 3
Query:   24 PNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASD-IQVLRCGPPPMNKAMAAH-------------LEALGYTSEMLFQF 332
            PNDKTKV L++ N+T EDILLK+ELD     YP +F  +Y+L++PP  W  G G+V+KE+++T  P P ++ I++  CGPP M KA++               L+ LGY  + +++F
Sbjct:  209 PNDKTKVTLVFGNITEEDILLKKELDILENTYPRRFRAFYLLDKPPAGWTQGTGYVTKELLKTVLPEPKTENIKIFVCGPPGMYKAVSGPKNSPKDQGELTGLLKELGYDKDQVYKF 325          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: MCR1_ASPNC (NADH-cytochrome b5 reductase 2 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=mcr1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.982e-20
Identity = 48/119 (40.34%), Postives = 72/119 (60.50%), Query Frame = 3
Query:   18 REPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASD-IQVLRCGPPPMNKA-------------MAAHLEALGYTSEMLFQF 332
            + P D+TKV L++ NV  EDILLK+E +     YP +F  +YVL+ PP+ W GG G++SKE+++T  P P  + I++  CGPP M KA             ++  L+ LGY+ E +F+F
Sbjct:  204 KNPEDQTKVTLVFGNVKEEDILLKKEFEELENTYPRRFRAFYVLDNPPKEWTGGKGYISKELLKTVLPEPKEENIKIFVCGPPGMYKAISGTKNSPTDQGELSGILKELGYSKEQVFKF 322          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NIA1_HORVU (Nitrate reductase [NADH] OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.812e-20
Identity = 44/100 (44.00%), Postives = 71/100 (71.00%), Query Frame = 3
Query:   21 EPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQ---PPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNK-AMAAHLEALGY 308
            +P D+T++HL+YAN + +DILL++ELD +AA+YPD+  ++YV++Q   P + W   VGFV++++++ H P    D   L CGPPPM K A++ +LE + Y
Sbjct:  807 QPEDETEMHLVYANRSEDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEDGWKFSVGFVTEDILRAHVPEGGDDTLALACGPPPMIKFAISPNLEKMKY 906          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NB5R2_RAT (NADH-cytochrome b5 reductase 2 OS=Rattus norvegicus GN=Cyb5r2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.812e-20
Identity = 43/106 (40.57%), Postives = 70/106 (66.04%), Query Frame = 3
Query:   18 REPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPM-NKAMAAHLEALGYTSEMLFQF 332
            ++ +D T++ L++AN T EDILL++EL+  A  + +QF+++Y L++PP  W    GF++ +MI+ H P P     +L CGPPP+  +A    LE LGYT +M+F +
Sbjct:  171 KDTSDGTRMSLLFANQTEEDILLRKELEEVATTHQNQFSLWYTLDRPPSGWEYSSGFITADMIKEHLPPPGEATLILVCGPPPLIQEAAHPSLEQLGYTKDMIFTY 276          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: MCR1_YEAS7 (NADH-cytochrome b5 reductase 2 OS=Saccharomyces cerevisiae (strain YJM789) GN=MCR1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.020e-19
Identity = 47/121 (38.84%), Postives = 69/121 (57.02%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLN--QPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAH-------------LEALGYTSEMLFQF 332
            +  PNDKTKV+L+Y N T +DILL++ELD    KYPD+F + Y ++  Q  + ++G +GF+SK+ IQ H P P     +  CGPPP   A +               L  LGY+ + +F+F
Sbjct:  182 VENPNDKTKVNLLYGNKTPQDILLRKELDALKEKYPDKFNVTYFVDDKQDDQDFDGEIGFISKDFIQEHVPGPKESTHLFVCGPPPFMNAYSGEKKSPKDQGELIGILNNLGYSKDQVFKF 302          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NIA_LOTJA (Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19
Identity = 44/99 (44.44%), Postives = 67/99 (67.68%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNK-AMAAHLEALGY 308
            +++P D TK++++YAN T +DILL+EELD +A KY D+F ++YV+    E W   VGFV++ +++ H P    D   L CGPPPM + A+  +LE +GY
Sbjct:  793 LKDPEDHTKMYVVYANRTEDDILLREELDTWAKKYEDRFKVWYVVETAKEGWGYSVGFVTEGVMREHLPEAGDDALALACGPPPMIQFAVNPNLEKMGY 891          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NCB5R_CANGA (NADH-cytochrome b5 reductase 1 OS=Candida glabrata GN=CBR1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19
Identity = 45/98 (45.92%), Postives = 68/98 (69.39%), Query Frame = 3
Query:   18 REPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP-ESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGY 308
            R+P+DKT+V L+Y NV  EDILLK+ELD    + PDQF I Y+L++P  + W GGVG+V+ ++++   P+   D+Q+L CGPP M  ++  +  ALG+
Sbjct:  172 RDPSDKTRVTLLYGNVLEEDILLKQELDDLVKQRPDQFKITYLLDKPERDDWEGGVGYVTLDLMKESFPSAEEDVQLLVCGPPGMVSSVKRNAVALGF 269          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: MCR1_ASPOR (NADH-cytochrome b5 reductase 2 OS=Aspergillus oryzae GN=mcr1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19
Identity = 45/119 (37.82%), Postives = 73/119 (61.34%), Query Frame = 3
Query:   18 REPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQ-VLRCGPPPMNKAMAAH-------------LEALGYTSEMLFQF 332
            + P+DKTKV L+Y NVT +DILLK+EL      YP +F  +Y+L++PP+ W GG G+++KE+++T  P P  + Q +  CGPP +  A++ +             L+ LGY  + +++F
Sbjct:  205 KNPDDKTKVTLVYGNVTEDDILLKKELQDLENTYPQRFKAFYLLDKPPKEWTGGKGYINKELLKTVLPEPKEENQKIFVCGPPGLYNAVSGNKVSPKDQGELSGILKELGYNKDQVYKF 323          
The following BLAST results are available for this feature:
BLAST of CX297701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
MCR1_PHANO9.228e-2139.17NADH-cytochrome b5 reductase 2 OS=Phaeosphaeria no... [more]
MCR1_EMENI2.685e-2039.50NADH-cytochrome b5 reductase 2 OS=Emericella nidul... [more]
MCR1_COCIM5.982e-2041.03NADH-cytochrome b5 reductase 2 OS=Coccidioides imm... [more]
MCR1_ASPNC5.982e-2040.34NADH-cytochrome b5 reductase 2 OS=Aspergillus nige... [more]
NIA1_HORVU7.812e-2044.00Nitrate reductase [NADH] OS=Hordeum vulgare PE=3 S... [more]
NB5R2_RAT7.812e-2040.57NADH-cytochrome b5 reductase 2 OS=Rattus norvegicu... [more]
MCR1_YEAS71.020e-1938.84NADH-cytochrome b5 reductase 2 OS=Saccharomyces ce... [more]
NIA_LOTJA1.333e-1944.44Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA... [more]
NCB5R_CANGA1.333e-1945.92NADH-cytochrome b5 reductase 1 OS=Candida glabrata... [more]
MCR1_ASPOR1.333e-1937.82NADH-cytochrome b5 reductase 2 OS=Aspergillus oryz... [more]

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Properties
Property NameValue
Genbank descriptionC06004C11SK RindPdig24 Citrus clementina cDNA clone C06004C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297701 ID=CX297701; Name=CX297701; organism=Citrus clementina; type=EST; length=711bp
GAGGCTAGAGCCATATTAGAGAACCAAATGACAAGACAAAGGTGCACCTC
ATTTATGCCAATGTTACATATGAGGACATTCTTTTAAAGGAAGAATTGGA
TGGATTTGCGGCGAAGTACCCTGATCAATTCACAATCTACTATGTGTTGA
ATCAGCCTCCTGAATCGTGGAATGGTGGTGTTGGCTTTGTCTCAAAGGAA
ATGATTCAAACCCATTGTCCCGCACCTGCTTCTGATATTCAGGTTCTGAG
ATGTGGTCCACCACCAATGAACAAGGCCATGGCTGCTCACCTCGAGGCAC
TTGGATATACTTCAGAAATGCTGTTCCAGTTCTAATCACTTCCATAAGGT
TGTCCAATTATTTGGACTGATATTCGTCACTCCTATTCGGTCCACATAAA
GAACTTTTTTACATCTCTTTTAAGCTGTATTTTGTTTCTCCTGTGACTAA
AGAAGCCGATGAAACCGGAGCATGGATTTTGTAATTGATCTTTTGCTTTA
ACCTATAAAAACAAATCTCCATGAGGTTTTTCAAATTAGGGATTTGTAGT
GCTATAGCTTGGAAACTGTAGAAAATAGGTTACAATAACCTAAATCAGGG
CAAGATTGGCCCTGATAGCCATTACCAATTATTGCACCATTGATACTTGA
AAATTTGTTGATGGCAAGATAATACTTTGATGACCTTAAAAAAAAAAAAA
AAAAAAAAAAA
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