CX297701

Overview
NameCX297701
Unique NameCX297701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: MCR1_YEAST (NADH-cytochrome b5 reductase 2 OS=Saccharomyces cerevisiae GN=MCR1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 46/121 (38.02%), Postives = 68/121 (56.20%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLN--QPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAH-------------LEALGYTSEMLFQF 332
            +  PNDKTKV+L+Y N T +DILL++ELD    KYPD+F + Y ++  Q  + ++G + F+SK+ IQ H P P     +  CGPPP   A +               L  LGY+ + +F+F
Sbjct:  182 VENPNDKTKVNLLYGNKTPQDILLRKELDALKEKYPDKFNVTYFVDDKQDDQDFDGEISFISKDFIQEHVPGPKESTHLFVCGPPPFMNAYSGEKKSPKDQGELIGILNNLGYSKDQVFKF 302          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: MCR1_ASPFU (NADH-cytochrome b5 reductase 2 OS=Aspergillus fumigatus GN=mcr1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 45/119 (37.82%), Postives = 73/119 (61.34%), Query Frame = 3
Query:   18 REPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASD-IQVLRCGPPPMNKAMAAH-------------LEALGYTSEMLFQF 332
            ++P D+TKV L++ NV  EDILLK+EL+     YP +F  +Y+L+ PP+ W GG G+++KE+++T  P P  + I++  CGPP M K+++               L  LGY+ + +F+F
Sbjct:  205 KDPEDQTKVTLVFGNVREEDILLKKELEELENTYPRRFRAFYLLDHPPKEWTGGKGYITKELLKTVLPEPKEENIKIFVCGPPGMYKSISGPKVSPTDQGELTGILAELGYSKDQVFKF 323          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: MCR1_ASPCL (NADH-cytochrome b5 reductase 2 OS=Aspergillus clavatus GN=mcr1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 47/119 (39.50%), Postives = 71/119 (59.66%), Query Frame = 3
Query:   18 REPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAP-ASDIQVLRCGPPPMNKAMAAH-------------LEALGYTSEMLFQF 332
            + P D+TKV L++ NV+ EDILLK+EL      +P +F  +YVL+ PP+ W GG G+V+KE+++T  P P   DI++  CGPP M KA++               L  LGY  + +++F
Sbjct:  204 KNPEDQTKVTLVFGNVSEEDILLKKELQELENTHPRRFKAFYVLDNPPKEWTGGKGYVTKELLKTVLPEPKEEDIKIFVCGPPGMYKAISGPKVSPKDQGELTGLLAELGYNKDQVYKF 322          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: MCR1_ASHGO (NADH-cytochrome b5 reductase 2 OS=Ashbya gossypii GN=MCR1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 46/121 (38.02%), Postives = 71/121 (58.68%), Query Frame = 3
Query:   12 HIRE-PNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAH-------------LEALGYTSEMLFQF 332
            HI E P D TKVHL+Y N T +DILL++EL+  A+KYPDQ  + Y +++P   + G  GF++K+ ++ + P P S+  +  CGPPP   A + +             L  LGYT + +++F
Sbjct:  186 HIAENPTDNTKVHLLYGNKTPQDILLRKELEELASKYPDQVKVTYFVDKPEGDYKGEKGFITKDFLKQNLPTPGSNSHIFVCGPPPFMDAFSGNKVSPSDQGQVTGVLSELGYTKDHVYKF 306          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NCB5R_ARATH (NADH-cytochrome b5 reductase-like protein OS=Arabidopsis thaliana GN=At5g20080 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.614e-19
Identity = 46/119 (38.66%), Postives = 72/119 (60.50%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAH-------------LEALGYTSEMLFQF 332
            ++ P D T++ L+YANV+ +DILLK++LD   A +P+   I+Y ++ P ++W GGVG++SK+M     P P  D  +L CGPP M + ++               L+ LGYT EM+F+F
Sbjct:  211 VKNPEDNTQISLLYANVSPDDILLKQKLDVLQANHPN-LKIFYTVDNPTKNWKGGVGYISKDMALKGLPLPTDDTLILVCGPPGMMEHISGGKAPDWSQGEVKGILKELGYTEEMVFKF 328          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: MCR1A_VANPO (NADH-cytochrome b5 reductase 2-A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=MCR1A PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.614e-19
Identity = 46/118 (38.98%), Postives = 66/118 (55.93%), Query Frame = 3
Query:   18 REPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKA-------------MAAHLEALGYTSEMLFQF 332
            + PNDKTK+ L Y+N T +D+L+K+ELD   AKYPDQ  I Y +  P + + G  GF+SKE I ++   P+    V  CGPPP   A             +   L+ LGYT + +++F
Sbjct:  179 KNPNDKTKIRLFYSNKTSQDVLMKKELDELQAKYPDQLRITYFITTPDKGYKGESGFISKEFIASNADKPSPKSHVFVCGPPPFMNAYSGDKKSPTDQGELVGILKELGYTIDQVYKF 296          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: MCR1_CANAL (NADH-cytochrome b5 reductase 2 OS=Candida albicans GN=MCR1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.924e-18
Identity = 47/117 (40.17%), Postives = 69/117 (58.97%), Query Frame = 3
Query:   24 PNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPE-SWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKA-------------MAAHLEALGYTSEMLFQF 332
            P D TKV+LIY N+T EDILLK+E+D  A+K+ DQ  ++Y +++  E  W G +GF++KE +Q     P SD +V  CGPP + KA             +   L+ LG+  E +F+F
Sbjct:  185 PKDNTKVNLIYGNLTPEDILLKKEIDAIASKHKDQVKVHYFVDKADEKKWEGQIGFITKEFLQKELEKPGSDFKVFVCGPPGLYKAISGPKVSPTDQGELTGALKDLGFEKEHVFKF 301          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NCB5R_ASHGO (NADH-cytochrome b5 reductase 1 OS=Ashbya gossypii GN=CBR1 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18
Identity = 44/97 (45.36%), Postives = 63/97 (64.95%), Query Frame = 3
Query:   24 PNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQ--PPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGY 308
            P DKT+V L+Y N T +DILLK ELD   A  PDQF I Y+L++    E W G +G++++ +++ H PAP+S  Q+L CGPPPM  +      +LG+
Sbjct:  175 PRDKTRVCLVYGNQTKDDILLKPELDAMVAAKPDQFKILYMLDKVAEGEQWEGKLGYITEAIMREHLPAPSSSAQLLLCGPPPMVSSAKRIAVSLGF 271          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NB5R3_PIG (NADH-cytochrome b5 reductase 3 (Fragment) OS=Sus scrofa GN=CYB5R3 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.282e-18
Identity = 43/107 (40.19%), Postives = 69/107 (64.49%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPM-NKAMAAHLEALGYTSEMLFQF 332
            +++P+D T  HL++AN T +DILL+ EL+    ++  +F ++Y +++ PE+W+   GFV++EMI+ H P P  +  VL CGPPPM   A   +LE +G+  E  F F
Sbjct:  166 MKDPDDHTVCHLLFANQTEKDILLRPELEELRNEHSARFKLWYTVDRAPEAWDYSQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYACLPNLERVGHPKERCFAF 272          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NB5R3_MACFA (NADH-cytochrome b5 reductase 3 OS=Macaca fascicularis GN=CYB5R3 PE=2 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.282e-18
Identity = 43/107 (40.19%), Postives = 69/107 (64.49%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPM-NKAMAAHLEALGYTSEMLFQF 332
            +++P+D T  HL++AN T +DILL+ EL+    ++  +F ++Y L++ PE+W+   GFV++EMI+ H P P  +  VL CGPPPM   A   +L+ +G+  E  F F
Sbjct:  195 MKDPDDHTVCHLLFANQTEKDILLRPELEELRNEHSARFKLWYTLDRAPEAWDYSQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYACLPNLDRVGHPKERCFAF 301          
The following BLAST results are available for this feature:
BLAST of CX297701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
MCR1_YEAST5.064e-1938.02NADH-cytochrome b5 reductase 2 OS=Saccharomyces ce... [more]
MCR1_ASPFU5.064e-1937.82NADH-cytochrome b5 reductase 2 OS=Aspergillus fumi... [more]
MCR1_ASPCL5.064e-1939.50NADH-cytochrome b5 reductase 2 OS=Aspergillus clav... [more]
MCR1_ASHGO5.064e-1938.02NADH-cytochrome b5 reductase 2 OS=Ashbya gossypii ... [more]
NCB5R_ARATH6.614e-1938.66NADH-cytochrome b5 reductase-like protein OS=Arabi... [more]
MCR1A_VANPO6.614e-1938.98NADH-cytochrome b5 reductase 2-A OS=Vanderwaltozym... [more]
MCR1_CANAL1.924e-1840.17NADH-cytochrome b5 reductase 2 OS=Candida albicans... [more]
NCB5R_ASHGO2.513e-1845.36NADH-cytochrome b5 reductase 1 OS=Ashbya gossypii ... [more]
NB5R3_PIG3.282e-1840.19NADH-cytochrome b5 reductase 3 (Fragment) OS=Sus s... [more]
NB5R3_MACFA3.282e-1840.19NADH-cytochrome b5 reductase 3 OS=Macaca fascicula... [more]

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Properties
Property NameValue
Genbank descriptionC06004C11SK RindPdig24 Citrus clementina cDNA clone C06004C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297701 ID=CX297701; Name=CX297701; organism=Citrus clementina; type=EST; length=711bp
GAGGCTAGAGCCATATTAGAGAACCAAATGACAAGACAAAGGTGCACCTC
ATTTATGCCAATGTTACATATGAGGACATTCTTTTAAAGGAAGAATTGGA
TGGATTTGCGGCGAAGTACCCTGATCAATTCACAATCTACTATGTGTTGA
ATCAGCCTCCTGAATCGTGGAATGGTGGTGTTGGCTTTGTCTCAAAGGAA
ATGATTCAAACCCATTGTCCCGCACCTGCTTCTGATATTCAGGTTCTGAG
ATGTGGTCCACCACCAATGAACAAGGCCATGGCTGCTCACCTCGAGGCAC
TTGGATATACTTCAGAAATGCTGTTCCAGTTCTAATCACTTCCATAAGGT
TGTCCAATTATTTGGACTGATATTCGTCACTCCTATTCGGTCCACATAAA
GAACTTTTTTACATCTCTTTTAAGCTGTATTTTGTTTCTCCTGTGACTAA
AGAAGCCGATGAAACCGGAGCATGGATTTTGTAATTGATCTTTTGCTTTA
ACCTATAAAAACAAATCTCCATGAGGTTTTTCAAATTAGGGATTTGTAGT
GCTATAGCTTGGAAACTGTAGAAAATAGGTTACAATAACCTAAATCAGGG
CAAGATTGGCCCTGATAGCCATTACCAATTATTGCACCATTGATACTTGA
AAATTTGTTGATGGCAAGATAATACTTTGATGACCTTAAAAAAAAAAAAA
AAAAAAAAAAA
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