CX297701

Overview
NameCX297701
Unique NameCX297701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NB5R3_CANFA (NADH-cytochrome b5 reductase 3 OS=Canis familiaris GN=CYB5R3 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.287e-18
Identity = 42/107 (39.25%), Postives = 69/107 (64.49%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPM-NKAMAAHLEALGYTSEMLFQF 332
            I++P+D T  HL++AN T +DILL+ EL+    ++  +F ++Y +++ PE+W+   GFV++EMI+ H P P  +  +L CGPPPM   A   +L+ +G+  E  F F
Sbjct:  195 IKDPHDPTVCHLLFANQTEKDILLRPELEELRNEHSARFKLWYTVDKAPEAWDYSQGFVNEEMIRDHLPPPEEEPLILMCGPPPMIQYACLPNLDRVGHPKERCFAF 301          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: MCR1_NEUCR (NADH-cytochrome b5 reductase 2 OS=Neurospora crassa GN=mcr-1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.287e-18
Identity = 43/117 (36.75%), Postives = 72/117 (61.54%), Query Frame = 3
Query:   24 PNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPAS-DIQVLRCGPPPMNKAMAAH-------------LEALGYTSEMLFQF 332
            P+DKTKV L++ NV+ ED+LLK EL      YP +F  +YVL+ PP+ W G  G+++K++++T  P P + DI++  CGPP M  +++ +             L+ LGY+ + +++F
Sbjct:  227 PDDKTKVTLVFGNVSEEDVLLKHELATIENHYPQRFRAFYVLDNPPKEWAGNKGYINKDLLKTVLPEPKNEDIKIFVCGPPGMMNSISGNKKSPRDQGELTGILKELGYSPDQVYKF 343          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NCB5R_YEAST (NADH-cytochrome b5 reductase 1 OS=Saccharomyces cerevisiae GN=CBR1 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.599e-18
Identity = 45/98 (45.92%), Postives = 63/98 (64.29%), Query Frame = 3
Query:   21 EPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP-ESWNGGVGFVSKEMIQTHCPAPASD-IQVLRCGPPPMNKAMAAHLEALGY 308
            +P+D TKV L++ NV  EDILLK+EL+   A  P QF I Y L+ P  E W GGVG+++K++I+ H PA   D +Q+L CGPP M  ++      LG+
Sbjct:  171 DPHDTTKVSLVFGNVHEEDILLKKELEALVAMKPSQFKIVYYLDSPDREDWTGGVGYITKDVIKEHLPAATMDNVQILICGPPAMVASVRRSTVDLGF 268          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: MCR1_MAGGR (NADH-cytochrome b5 reductase 2 OS=Magnaporthe grisea GN=MCR1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.599e-18
Identity = 45/119 (37.82%), Postives = 71/119 (59.66%), Query Frame = 3
Query:   18 REPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASD-IQVLRCGPPPMNKAMAAH-------------LEALGYTSEMLFQF 332
            + P DKTKV L+  N+T EDILLK++L      YP +F  +YVL+ PP+ W G  G+++K++++T  P P  + I+V  CGPP M KA++ +             L+ LGY  + +++F
Sbjct:  213 KNPADKTKVTLVVGNITEEDILLKKQLAELENTYPQRFRAFYVLDNPPKDWAGTKGYITKDLLKTVLPEPKEENIKVFVCGPPGMMKAISGNKVSPKDQGEVSGILKELGYKQDQIYKF 331          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NB5R3_RAT (NADH-cytochrome b5 reductase 3 OS=Rattus norvegicus GN=Cyb5r3 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 40/107 (37.38%), Postives = 70/107 (65.42%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNK-AMAAHLEALGYTSEMLFQF 332
            +++PND T  +L++AN + +DILL+ EL+    ++  +F ++Y +++ P++W+   GFV++EMI+ H P P  +  +L CGPPPM + A   +LE +G+  E  F F
Sbjct:  195 LKDPNDHTVCYLLFANQSEKDILLRPELEELRNEHSSRFKLWYTVDKAPDAWDYSQGFVNEEMIRDHLPPPGEETLILMCGPPPMIQFACLPNLERVGHPKERCFTF 301          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NB5R3_BOVIN (NADH-cytochrome b5 reductase 3 OS=Bos taurus GN=CYB5R3 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 42/107 (39.25%), Postives = 69/107 (64.49%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPM-NKAMAAHLEALGYTSEMLFQF 332
            +++P+D T  HL++AN T +DILL+ EL+    ++  +F ++Y +++ PE+W+   GFV++EMI+ H P P  +  VL CGPPPM   A   +L+ +G+  E  F F
Sbjct:  194 MKDPDDHTVCHLLFANQTEKDILLRPELEELRNEHSARFKLWYTVDKAPEAWDYSQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYACLPNLDRVGHPKERCFAF 300          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: MCR1_KLULA (NADH-cytochrome b5 reductase 2 OS=Kluyveromyces lactis GN=MCR1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 49/121 (40.50%), Postives = 64/121 (52.89%), Query Frame = 3
Query:   12 HIRE-PNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKA-------------MAAHLEALGYTSEMLFQF 332
            HI E P D TK+HL Y N T EDILLK ELD    KYPDQ  I Y +++   ++ G  GF++K+ +    P P+   QV  CGPPP  KA             +   L  LGY+   +F+F
Sbjct:  176 HIAENPEDNTKIHLYYGNKTPEDILLKSELDNLQKKYPDQVKITYFVDKAEGNFEGETGFITKDYLSHQAPKPSEKNQVFVCGPPPFMKAYSGPKVSPQDQGELTGILAELGYSKSNVFKF 296          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NIA_PETHY (Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.550e-18
Identity = 40/100 (40.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQP-PESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNK-AMAAHLEALGY 308
            +++P D+T++H++YAN T +DILLK+ELD +A K P++  ++YV+     E W    GF+++ +++ H P P+     L CGPPPM + A+  +LE +GY
Sbjct:  801 LKDPEDETEMHVVYANRTEDDILLKDELDSWAVKLPERVKVWYVVQDSIKEGWKYSTGFITEAVLREHIPLPSQTTLALACGPPPMIQFAVNPNLEKMGY 900          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: YMI7_YEAST (Uncharacterized oxidoreductase YML087C OS=Saccharomyces cerevisiae GN=YML087C PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 42/100 (42.00%), Postives = 66/100 (66.00%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGYTS 314
            I  P D T + LIYAN T +DIL+K +LD  A +YP  F ++YV+++P   WNG VG+V+ E ++ + P  A D ++L CGPP MN+ +  + + LG+++
Sbjct:  200 IPSPEDLTHISLIYANETEDDILMKSQLDHMAKEYP-HFKVHYVIHKPNGKWNGDVGYVTLEEMKRYLPKQAEDHRLLICGPPKMNEMVLNYAKELGWSN 298          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: MCR1_CHAGB (NADH-cytochrome b5 reductase 2 OS=Chaetomium globosum GN=MCR1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 45/117 (38.46%), Postives = 71/117 (60.68%), Query Frame = 3
Query:   24 PNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASD-IQVLRCGPPPMNKAMAAH-------------LEALGYTSEMLFQF 332
            P+D+TKV L++ NV  +DILLK+EL       P +F  +YVL+ PP+ W GG GF++K++++T  P P  + I+V  CGPP M  A++ +             L+ LGY+ E +++F
Sbjct:  232 PDDQTKVTLVFGNVREDDILLKKELAALENNNPRRFRAFYVLDDPPKHWTGGKGFITKDLLKTVLPEPKDENIKVFVCGPPGMMDAISGNKKSPKDQGELKGILKELGYSPEQVYKF 348          
The following BLAST results are available for this feature:
BLAST of CX297701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
NB5R3_CANFA4.287e-1839.25NADH-cytochrome b5 reductase 3 OS=Canis familiaris... [more]
MCR1_NEUCR4.287e-1836.75NADH-cytochrome b5 reductase 2 OS=Neurospora crass... [more]
NCB5R_YEAST5.599e-1845.92NADH-cytochrome b5 reductase 1 OS=Saccharomyces ce... [more]
MCR1_MAGGR5.599e-1837.82NADH-cytochrome b5 reductase 2 OS=Magnaporthe gris... [more]
NB5R3_RAT7.312e-1837.38NADH-cytochrome b5 reductase 3 OS=Rattus norvegicu... [more]
NB5R3_BOVIN7.312e-1839.25NADH-cytochrome b5 reductase 3 OS=Bos taurus GN=CY... [more]
MCR1_KLULA7.312e-1840.50NADH-cytochrome b5 reductase 2 OS=Kluyveromyces la... [more]
NIA_PETHY9.550e-1840.00Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA... [more]
YMI7_YEAST1.247e-1742.00Uncharacterized oxidoreductase YML087C OS=Saccharo... [more]
MCR1_CHAGB1.247e-1738.46NADH-cytochrome b5 reductase 2 OS=Chaetomium globo... [more]

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Properties
Property NameValue
Genbank descriptionC06004C11SK RindPdig24 Citrus clementina cDNA clone C06004C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297701 ID=CX297701; Name=CX297701; organism=Citrus clementina; type=EST; length=711bp
GAGGCTAGAGCCATATTAGAGAACCAAATGACAAGACAAAGGTGCACCTC
ATTTATGCCAATGTTACATATGAGGACATTCTTTTAAAGGAAGAATTGGA
TGGATTTGCGGCGAAGTACCCTGATCAATTCACAATCTACTATGTGTTGA
ATCAGCCTCCTGAATCGTGGAATGGTGGTGTTGGCTTTGTCTCAAAGGAA
ATGATTCAAACCCATTGTCCCGCACCTGCTTCTGATATTCAGGTTCTGAG
ATGTGGTCCACCACCAATGAACAAGGCCATGGCTGCTCACCTCGAGGCAC
TTGGATATACTTCAGAAATGCTGTTCCAGTTCTAATCACTTCCATAAGGT
TGTCCAATTATTTGGACTGATATTCGTCACTCCTATTCGGTCCACATAAA
GAACTTTTTTACATCTCTTTTAAGCTGTATTTTGTTTCTCCTGTGACTAA
AGAAGCCGATGAAACCGGAGCATGGATTTTGTAATTGATCTTTTGCTTTA
ACCTATAAAAACAAATCTCCATGAGGTTTTTCAAATTAGGGATTTGTAGT
GCTATAGCTTGGAAACTGTAGAAAATAGGTTACAATAACCTAAATCAGGG
CAAGATTGGCCCTGATAGCCATTACCAATTATTGCACCATTGATACTTGA
AAATTTGTTGATGGCAAGATAATACTTTGATGACCTTAAAAAAAAAAAAA
AAAAAAAAAAA
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