CX297701

Overview
NameCX297701
Unique NameCX297701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NB5R3_MOUSE (NADH-cytochrome b5 reductase 3 OS=Mus musculus GN=Cyb5r3 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.629e-17
Identity = 40/107 (37.38%), Postives = 70/107 (65.42%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNK-AMAAHLEALGYTSEMLFQF 332
            +++PND T  +L++AN + +DILL+ EL+    ++  +F ++Y +++ P++W+   GFV++EMI+ H P P  +  +L CGPPPM + A   +LE +G+  E  F F
Sbjct:  195 LKDPNDHTVCYLLFANQSEKDILLRPELEELRNEHSARFKLWYTVDKAPDAWDYSQGFVNEEMIRDHLPTPGEEPLILMCGPPPMIQFACLPNLERVGHPKERCFTF 301          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NIA1_TOBAC (Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN=NIA1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.127e-17
Identity = 41/100 (41.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQP-PESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNK-AMAAHLEALGY 308
            +++P D T+++++YAN T +DILLKEELD +A K P++  ++YV+     E W   +GF+S+ +++ H P P+     L CGPPPM + A+  +LE +GY
Sbjct:  796 LKDPEDDTEMYVVYANRTEDDILLKEELDSWAEKIPERVKVWYVVQDSIKEGWKYSLGFISEAILREHIPEPSHTTLALACGPPPMIQFAVNPNLEKMGY 895          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NIA1_SOYBN (Inducible nitrate reductase [NADH] 1 OS=Glycine max GN=INR1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.127e-17
Identity = 44/103 (42.72%), Postives = 69/103 (66.99%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQP-PESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNK-AMAAHLEALGYTSE 317
            +++P D T++H++YAN T +DILLKEELD +A KY D+  ++YV+ +   E W   VGF+++ ++  H P  + D   L CGPPPM + A+  +LE LGY ++
Sbjct:  779 LKDPEDCTEMHVVYANRTEDDILLKEELDEWAKKY-DRLKVWYVIQESIREGWEYSVGFITESILTEHIPNASPDTLALTCGPPPMIQFAVQPNLEKLGYDTQ 880          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NIA_CICIN (Nitrate reductase [NADH] OS=Cichorium intybus GN=NIA PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.779e-17
Identity = 41/102 (40.20%), Postives = 70/102 (68.63%), Query Frame = 3
Query:    9 SHIREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQP-PESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNK-AMAAHLEALGY 308
            S++++P D T+++++YAN T +DILL+EELD +A KY D+  ++YV+ +   E W    GF+++++++ H P  + D   L CGPPPM + A+  +LE +GY
Sbjct:  810 SYLKDPEDDTEMYVVYANRTEDDILLREELDAWADKYSDRVKVWYVVAKSIREGWKYSEGFITEDIMREHVPEVSEDTLALACGPPPMIQFAINPNLEKMGY 911          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NIA2_TOBAC (Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN=NIA2 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.779e-17
Identity = 40/100 (40.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQP-PESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNK-AMAAHLEALGY 308
            +++P D T+++++YAN T +DILLKEELD +A K P++  ++YV+     E W   +GF+++ +++ H P P+     L CGPPPM + A+  +LE +GY
Sbjct:  796 LKDPEDDTEMYVVYANRTEDDILLKEELDSWAEKIPERVKVWYVVQDSIKEGWKYSIGFITEAILREHIPEPSHTTLALACGPPPMIQFAVNPNLEKMGY 895          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NIA2_SOYBN (Inducible nitrate reductase [NADH] 2 OS=Glycine max GN=INR2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.740e-17
Identity = 44/103 (42.72%), Postives = 68/103 (66.02%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQP-PESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNK-AMAAHLEALGYTSE 317
            +++P D T++H++YAN T +DILLKEELD +A KY D+  ++YV+     E W   VGF+++ ++  H P  + D   L CGPPPM + A+  +LE LGY ++
Sbjct:  783 LKDPEDCTEMHVVYANRTEDDILLKEELDEWAKKY-DRLKVWYVIQASIREGWEYSVGFITESILTEHIPNASPDTLALTCGPPPMIQFAVQPNLEKLGYDTQ 884          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: YMM5_YEAST (Uncharacterized oxidoreductase YML125C OS=Saccharomyces cerevisiae GN=YML125C PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.190e-17
Identity = 42/98 (42.86%), Postives = 61/98 (62.24%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAHLEALGY 308
            I  P D TKV L+YAN T  DILLK+ELD  A KYP  F ++YV++ P + W G VG+++K+ +  + P  + D ++L CGP  MN     + + LG+
Sbjct:  200 ITVPEDLTKVSLLYANETENDILLKDELDEMAEKYP-HFQVHYVVHYPSDRWTGDVGYITKDQMNRYLPEYSEDNRLLICGPDGMNNLALQYAKELGW 296          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NIA2_ARATH (Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana GN=NIA2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.084e-17
Identity = 41/100 (41.00%), Postives = 66/100 (66.00%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCP-APASDIQVLRCGPPPMNK-AMAAHLEALGY 308
            +++P D+T++++IYAN T EDILL+EELDG+A +YPD+  ++YV+    E W    GF+S+ +++ H P         + CGPPPM + A+  +LE + Y
Sbjct:  809 LKDPEDETEMYVIYANRTEEDILLREELDGWAEQYPDRLKVWYVVESAKEGWAYSTGFISEAIMREHIPDGLDGSALAMACGPPPMIQFAVQPNLEKMQY 908          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NCB5R_YEAS7 (NADH-cytochrome b5 reductase 1 OS=Saccharomyces cerevisiae (strain YJM789) GN=CBR1 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.056e-16
Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 3
Query:   21 EPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP-ESWNGGVGFVSKEMIQTHCPAPASD-IQVLRCGPPPMNKAMAAHLEALGY 308
            + +D TKV L++ NV  EDILLK+EL+   A  P QF I Y L+ P  E W GGVG+++K++I+ H PA   D +Q+L CGPP M  ++      LG+
Sbjct:  171 DSHDTTKVSLVFGNVHEEDILLKKELEALVAMKPSQFKIVYYLDSPDREDWAGGVGYITKDVIKEHLPAATVDNVQILICGPPAMVASVRRSTVDLGF 268          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NIA1_PHAVU (Nitrate reductase [NADH] 1 OS=Phaseolus vulgaris GN=NIA1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.379e-16
Identity = 43/100 (43.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLN-QPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNK-AMAAHLEALGY 308
            +++P D+T+++++YAN T +DILLKEELD +A K+ D+  ++YVL     E W   VGF+++ +++ H P  + D   L CGPPPM + A+  +LE LGY
Sbjct:  774 LKDPEDRTEMYVVYANRTEDDILLKEELDEWAKKH-DRLKVWYVLQANIREGWEYSVGFITESILREHVPLASPDTLALTCGPPPMIQFAVQPNLEKLGY 872          
The following BLAST results are available for this feature:
BLAST of CX297701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
NB5R3_MOUSE1.629e-1737.38NADH-cytochrome b5 reductase 3 OS=Mus musculus GN=... [more]
NIA1_TOBAC2.127e-1741.00Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN... [more]
NIA1_SOYBN2.127e-1742.72Inducible nitrate reductase [NADH] 1 OS=Glycine ma... [more]
NIA_CICIN2.779e-1740.20Nitrate reductase [NADH] OS=Cichorium intybus GN=N... [more]
NIA2_TOBAC2.779e-1740.00Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN... [more]
NIA2_SOYBN4.740e-1742.72Inducible nitrate reductase [NADH] 2 OS=Glycine ma... [more]
YMM5_YEAST6.190e-1742.86Uncharacterized oxidoreductase YML125C OS=Saccharo... [more]
NIA2_ARATH8.084e-1741.00Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana... [more]
NCB5R_YEAS71.056e-1644.90NADH-cytochrome b5 reductase 1 OS=Saccharomyces ce... [more]
NIA1_PHAVU1.379e-1643.00Nitrate reductase [NADH] 1 OS=Phaseolus vulgaris G... [more]

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Properties
Property NameValue
Genbank descriptionC06004C11SK RindPdig24 Citrus clementina cDNA clone C06004C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297701 ID=CX297701; Name=CX297701; organism=Citrus clementina; type=EST; length=711bp
GAGGCTAGAGCCATATTAGAGAACCAAATGACAAGACAAAGGTGCACCTC
ATTTATGCCAATGTTACATATGAGGACATTCTTTTAAAGGAAGAATTGGA
TGGATTTGCGGCGAAGTACCCTGATCAATTCACAATCTACTATGTGTTGA
ATCAGCCTCCTGAATCGTGGAATGGTGGTGTTGGCTTTGTCTCAAAGGAA
ATGATTCAAACCCATTGTCCCGCACCTGCTTCTGATATTCAGGTTCTGAG
ATGTGGTCCACCACCAATGAACAAGGCCATGGCTGCTCACCTCGAGGCAC
TTGGATATACTTCAGAAATGCTGTTCCAGTTCTAATCACTTCCATAAGGT
TGTCCAATTATTTGGACTGATATTCGTCACTCCTATTCGGTCCACATAAA
GAACTTTTTTACATCTCTTTTAAGCTGTATTTTGTTTCTCCTGTGACTAA
AGAAGCCGATGAAACCGGAGCATGGATTTTGTAATTGATCTTTTGCTTTA
ACCTATAAAAACAAATCTCCATGAGGTTTTTCAAATTAGGGATTTGTAGT
GCTATAGCTTGGAAACTGTAGAAAATAGGTTACAATAACCTAAATCAGGG
CAAGATTGGCCCTGATAGCCATTACCAATTATTGCACCATTGATACTTGA
AAATTTGTTGATGGCAAGATAATACTTTGATGACCTTAAAAAAAAAAAAA
AAAAAAAAAAA
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