CX297701

Overview
NameCX297701
Unique NameCX297701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: MCR1_LODEL (NADH-cytochrome b5 reductase 2 OS=Lodderomyces elongisporus GN=MCR1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.379e-16
Identity = 43/118 (36.44%), Postives = 68/118 (57.63%), Query Frame = 3
Query:   24 PNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVL--NQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMA-------------AHLEALGYTSEMLFQF 332
            P DKTKV LIY N + ED+L+K+ +D  AAK+ DQ  + Y +  N+  + W G VGF++KE ++     P+ D ++  CGPP + KA++               L+ LG++ E +F+F
Sbjct:  183 PEDKTKVSLIYGNTSPEDVLIKDRIDDIAAKHKDQVKVTYFVDENKATKDWEGEVGFITKEFLEKELDKPSPDFKIFVCGPPGLYKAISGVKVSPTDQGEVEGALKDLGFSKEHVFKF 300          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NIA1_BRANA (Nitrate reductase [NADH], clone PBNBR1405 OS=Brassica napus GN=NIA1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.801e-16
Identity = 40/102 (39.22%), Postives = 68/102 (66.67%), Query Frame = 3
Query:    9 SHIREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCP-APASDIQVLRCGPPPMNK-AMAAHLEALGY 308
            S + +P D+T++ ++YAN T +DIL++EEL+G+A+K+PD+  I+YV+    E W    GF+++ +++ H P     +   L CGPPPM + A+  +LE +GY
Sbjct:  801 SILSDPEDETEMFVVYANRTEDDILVREELEGWASKFPDRLKIWYVVEIAKEGWEYSTGFITEAVLREHVPEGLEGESLALACGPPPMIQFALQPNLEKMGY 902          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NIA_SOLLC (Nitrate reductase [NADH] OS=Solanum lycopersicum GN=NIA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.072e-16
Identity = 39/102 (38.24%), Postives = 68/102 (66.67%), Query Frame = 3
Query:    9 SHIREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQP-PESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNK-AMAAHLEALGY 308
            S +++P D T+++++YAN T +DILLK+ELD +A + P++  ++YV+ +   + W    GFV++ +++ H P P+     L CGPPPM + A+  +LE +GY
Sbjct:  801 SILKDPEDDTEMYVVYANRTEDDILLKDELDAWAEQVPNRVKVWYVVQESITQGWKYSTGFVTESILREHIPEPSHTTLALACGPPPMIQFAINPNLEKMGY 902          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NB5R2_DANRE (NADH-cytochrome b5 reductase 2 OS=Danio rerio GN=cyb5r2 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16
Identity = 42/102 (41.18%), Postives = 60/102 (58.82%), Query Frame = 3
Query:   30 DKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPM-NKAMAAHLEALGYTSEMLFQF 332
            D+T   LI+AN T +DILL+ ELD     +P +  ++Y L++P E W    GFV+  M++ H P   SD+ V+ CGPP M  KA   +L  LGY  E +F +
Sbjct:  208 DETVCSLIFANQTEKDILLRNELDEVHRNHPSKLKLWYTLDRPSEGWKYSEGFVNAAMMKDHLPPADSDVLVVMCGPPAMIEKACLPNLLKLGYKKENIFAY 309          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NIA2_BRANA (Nitrate reductase [NADH], clone PBNBR1412 OS=Brassica napus GN=NIA2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.167e-15
Identity = 39/102 (38.24%), Postives = 67/102 (65.69%), Query Frame = 3
Query:    9 SHIREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCP-APASDIQVLRCGPPPMNK-AMAAHLEALGY 308
            S + +P D+T++ ++YAN T +DIL++EEL+G+A K+ D+  ++YV+    E WN   GF+++ +++ H P     +   L CGPPPM + A+  +LE +GY
Sbjct:  801 SILSDPEDETEMFVVYANRTEDDILVREELEGWANKHKDRLKVWYVVEIAKEGWNYSTGFITEPVLREHVPEGLEGESLALACGPPPMIQFALQPNLEKMGY 902          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: MCR1_USTMA (NADH-cytochrome b5 reductase 2 OS=Ustilago maydis GN=MCR1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.167e-15
Identity = 45/118 (38.14%), Postives = 72/118 (61.02%), Query Frame = 3
Query:   24 PNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAP--ASDIQVLRCGPPPMNKAMAAH-------------LEALGYTSEMLFQF 332
            P+DKTKV LIY+N T +DILL+E+ D  A K  D+FTI Y L++ P+ +NG  G+V++++++ H P P  A   ++  CGPPP  +A++               L  LGY ++ +++F
Sbjct:  234 PSDKTKVTLIYSNKTEQDILLREQFDQLAKK-DDRFTIIYGLDKLPKGFNGFEGYVTEDLVKKHLPQPELADKAKIFVCGPPPQVEAISGKKGPKGSQGELKGLLAKLGYQADQVYKF 350          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: MCR1B_VANPO (NADH-cytochrome b5 reductase 2-B OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=MCR1B PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.525e-15
Identity = 49/124 (39.52%), Postives = 66/124 (53.23%), Query Frame = 3
Query:    9 SHIREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP----ESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMAAH-------------LEALGYTSEMLFQ 329
            S +  P DKTK++L YAN T +DILLK+ELD F  K+ D+  I+Y L+QP      S     GF++KE I++  PA   +  V  CGP P  KA A               L+ LGYT   +F+
Sbjct:  182 SILSNPEDKTKINLFYANKTSDDILLKKELDEFQQKFSDRVKIHYYLSQPKTKDIASTGAKKGFIAKEDIESLAPASNENTHVFVCGPEPFVKAYAGQQGPLFFQGSFGGILKELGYTKSQVFK 305          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NIA_LOTTE (Nitrate reductase [NADH] (Fragment) OS=Lotus tetragonolobus GN=NIA PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.991e-15
Identity = 40/104 (38.46%), Postives = 66/104 (63.46%), Query Frame = 3
Query:   15 IREPNDKTKVHL-IYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMA--AHLEALGYTSE 317
            +++P+D+T++   +Y+N T  DILL+EELD +A K+ D+F ++YV+++    W    G V++ +++ H P P SD   L CGPPP+N A      LE +GY  +
Sbjct:   47 LKDPDDRTEMFFAVYSNKTESDILLREELDAWAKKHSDRFKVWYVVDKAGNDWAFSTGRVNESIMRVHLPGP-SDALALACGPPPINSAYGWQPSLENIGYKKD 149          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NIA1_ARATH (Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana GN=NIA1 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.991e-15
Identity = 38/102 (37.25%), Postives = 69/102 (67.65%), Query Frame = 3
Query:    9 SHIREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPESWNGGVGFVSKEMIQTHCP-APASDIQVLRCGPPPMNK-AMAAHLEALGY 308
            S + +P D+T+++++YAN T +DIL++EEL+G+A+K+ ++  I+YV+    E W+   GF+++ +++ H P     +   L CGPPPM + A+  +LE +GY
Sbjct:  807 SILSDPEDETEMYVVYANRTEDDILVREELEGWASKHKERLKIWYVVEIAKEGWSYSTGFITEAVLREHIPEGLEGESLALACGPPPMIQFALQPNLEKMGY 908          
BLAST of CX297701 vs. ExPASy Swiss-Prot
Match: NIA_VOLCA (Nitrate reductase [NADH] OS=Volvox carteri GN=NITA PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.436e-15
Identity = 44/111 (39.64%), Postives = 65/111 (58.56%), Query Frame = 3
Query:   15 IREPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPPES-WNGGVGFVSKEMIQTH---CPAPASDIQVLRCGPPPM-NKAMAAHLEALGYTSEMLFQF 332
            +R+P DKT++ L++AN T EDILL+EELD  A  +PD+F +++ ++Q   S W    G V+ EM + H   C  P  +   L CGPP M        LE++GY+ E +  F
Sbjct:  756 LRDPEDKTQISLVFANNTEEDILLREELDELANNHPDRFHLWHTVSQTNSSDWKFSTGRVTLEMFKQHLFACSGP--ECLALMCGPPAMLEHCCVPFLESMGYSKEQMIHF 864          
The following BLAST results are available for this feature:
BLAST of CX297701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
MCR1_LODEL1.379e-1636.44NADH-cytochrome b5 reductase 2 OS=Lodderomyces elo... [more]
NIA1_BRANA1.801e-1639.22Nitrate reductase [NADH], clone PBNBR1405 OS=Brass... [more]
NIA_SOLLC3.072e-1638.24Nitrate reductase [NADH] OS=Solanum lycopersicum G... [more]
NB5R2_DANRE8.938e-1641.18NADH-cytochrome b5 reductase 2 OS=Danio rerio GN=c... [more]
NIA2_BRANA1.167e-1538.24Nitrate reductase [NADH], clone PBNBR1412 OS=Brass... [more]
MCR1_USTMA1.167e-1538.14NADH-cytochrome b5 reductase 2 OS=Ustilago maydis ... [more]
MCR1B_VANPO1.525e-1539.52NADH-cytochrome b5 reductase 2-B OS=Vanderwaltozym... [more]
NIA_LOTTE1.991e-1538.46Nitrate reductase [NADH] (Fragment) OS=Lotus tetra... [more]
NIA1_ARATH1.991e-1537.25Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana... [more]
NIA_VOLCA4.436e-1539.64Nitrate reductase [NADH] OS=Volvox carteri GN=NITA... [more]

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Properties
Property NameValue
Genbank descriptionC06004C11SK RindPdig24 Citrus clementina cDNA clone C06004C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297701 ID=CX297701; Name=CX297701; organism=Citrus clementina; type=EST; length=711bp
GAGGCTAGAGCCATATTAGAGAACCAAATGACAAGACAAAGGTGCACCTC
ATTTATGCCAATGTTACATATGAGGACATTCTTTTAAAGGAAGAATTGGA
TGGATTTGCGGCGAAGTACCCTGATCAATTCACAATCTACTATGTGTTGA
ATCAGCCTCCTGAATCGTGGAATGGTGGTGTTGGCTTTGTCTCAAAGGAA
ATGATTCAAACCCATTGTCCCGCACCTGCTTCTGATATTCAGGTTCTGAG
ATGTGGTCCACCACCAATGAACAAGGCCATGGCTGCTCACCTCGAGGCAC
TTGGATATACTTCAGAAATGCTGTTCCAGTTCTAATCACTTCCATAAGGT
TGTCCAATTATTTGGACTGATATTCGTCACTCCTATTCGGTCCACATAAA
GAACTTTTTTACATCTCTTTTAAGCTGTATTTTGTTTCTCCTGTGACTAA
AGAAGCCGATGAAACCGGAGCATGGATTTTGTAATTGATCTTTTGCTTTA
ACCTATAAAAACAAATCTCCATGAGGTTTTTCAAATTAGGGATTTGTAGT
GCTATAGCTTGGAAACTGTAGAAAATAGGTTACAATAACCTAAATCAGGG
CAAGATTGGCCCTGATAGCCATTACCAATTATTGCACCATTGATACTTGA
AAATTTGTTGATGGCAAGATAATACTTTGATGACCTTAAAAAAAAAAAAA
AAAAAAAAAAA
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