CX297705

Overview
NameCX297705
Unique NameCX297705
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX297705 vs. ExPASy Swiss-Prot
Match: RL32P_MOUSE (Putative 60S ribosomal protein L32' OS=Mus musculus GN=Rpl32-ps PE=5 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:  577 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKK 708
            R QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGY S+KK
Sbjct:   22 RHQSDRYVKIKWNWRKPRGIDNRVRRRFKGQILMPNIGYRSNKK 65
[Close]
BLAST of CX297705 vs. ExPASy Swiss-Prot
Match: RL32_ICTPU (60S ribosomal protein L32 OS=Ictalurus punctatus GN=rpl32 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:  577 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKHATICP 726
            R QSDR + ++ NWR+P+GID+RVR  FKG +LMPNIGYGS+KK   + P
Sbjct:   22 RHQSDRYVKIRRNWRKPRGIDNRVRSGFKGQMLMPNIGYGSNKKTKHMLP 71
The following BLAST results are available for this feature:
BLAST of CX297705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RL32P_MOUSE1.822e-1168.18Putative 60S ribosomal protein L32' OS=Mus musculu... [more]
RL32_ICTPU3.108e-1160.0060S ribosomal protein L32 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionC06004D03SK RindPdig24 Citrus clementina cDNA clone C06004D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297705 ID=CX297705; Name=CX297705; organism=Citrus clementina; type=EST; length=729bp
GAGGTTTTTTCTTACAAGCGCTACTATATTGATCTCACAAGATATAATAA
TAATAACTCACAAAAAGAATCCTTTGCACTTGAATACATAATTAATCGTA
CTTGAAAAAATAACAACAACAATAACCTAGAGACAAAATGACAAAATAAA
CGCGGATCAGGTGTAAGGAACAGGAAGCACATGGTGAGTAGCTACATTGT
ATACTCACGAACACTGGACTGGCTTCGCGTTACTAATTTCTCAATGACCA
GCGCAGCAACTCGCGATAGGTTCAACTCCCTCAAAGAAGATAAATTCACA
TCACTTCTGGATGACTTGAGGCAATGTGTACAATGTATCCACCATCTCAA
GGCTGATATCCTCGTAAATCCTTCAACTTTCGTCAGCAAAAGGATCAATG
AAATGTGCATAAATGGCTAAGTAAAAGAGCCCAACACAAATAGCTTCCAT
TTTATTTCCCTGTATATTCATAGCACCAAACAGTTGGTTTCCACATCTGC
AACTATCATATCTGAAAAAATGGCTGTTCCTTTGCTGACCAAGAAGATAG
TGAAGAAGCGTCTCAAGAAGTTCAAGAGGCCCCAGAGTGACAGGAAGATA
TCAGTGAAGGAAAATTGGCGAAGGCCGAAGGGTATTGATTCACGTGTCAG
GAGAAAGTTCAAAGGATGTGTTCTGATGCCCAATATTGGCTACGGCTCGG
ACAAGAAACACGCCACTATCTGCCCAATG
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