CX297716

Overview
NameCX297716
Unique NameCX297716
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30_NEUCR (60S ribosomal protein L30 OS=Neurospora crassa GN=rpl-30 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.092e-29
Identity = 59/94 (62.77%), Postives = 77/94 (81.91%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 401
            +SI  +LALV+KSGK  LGY++ L++LRS K KLIL+S N PPLRKSE+EYY+M++K  VHHY G N++LGTACGK FR S ++I+D GDSDI+
Sbjct:   11 QSIGAKLALVIKSGKVVLGYRSTLKALRSGKAKLILISANTPPLRKSELEYYSMMSKTAVHHYTGTNIELGTACGKLFRCSTMAILDAGDSDIL 104          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30_DICDI (60S ribosomal protein L30 OS=Dictyostelium discoideum GN=rpl30 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.177e-29
Identity = 62/97 (63.92%), Postives = 81/97 (83.51%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 410
            E+I ++LALVMKSGK  LGYK+ L++LR+ K KLILL++N P +R+SEIEYYAML+K  VH Y+GNNVDLGTA G+++RVS +SI D GDSDI+ +L
Sbjct:   12 ENIGSKLALVMKSGKSQLGYKSTLKTLRAGKSKLILLASNLPSIRRSEIEYYAMLSKTTVHLYSGNNVDLGTALGRHYRVSVMSITDAGDSDILTAL 108          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30_TRYBB (60S ribosomal protein L30 OS=Trypanosoma brucei brucei GN=RPL30 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.689e-28
Identity = 55/93 (59.14%), Postives = 74/93 (79.57%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398
            ++IN ++ LVMKSGKY LG +  L++LR  + KL+++S NCPP+RK+EIEYY  L+K  +HHY+GNN+DLGTACG++FR   LSI D GDSDI
Sbjct:   10 DTINTKIQLVMKSGKYVLGTQQSLKTLRQGRSKLVVISANCPPIRKAEIEYYCTLSKTPIHHYSGNNLDLGTACGRHFRACVLSITDVGDSDI 102          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30_YEAST (60S ribosomal protein L30 OS=Saccharomyces cerevisiae GN=RPL30 PE=1 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.022e-27
Identity = 59/97 (60.82%), Postives = 78/97 (80.41%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 410
            ESIN +LALV+KSGKYTLGYK+ ++SLR  K KLI+++ N P LRKSE+EYYAML+K  V+++ G N +LGTA GK FRV  +SI++ GDSDI+ +L
Sbjct:    8 ESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSILEAGDSDILTTL 104          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30_YARLI (60S ribosomal protein L30 OS=Yarrowia lipolytica GN=RPL30 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.022e-27
Identity = 54/94 (57.45%), Postives = 75/94 (79.79%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 401
            +++N +L L +KSGKYTLGYK+ +++LR  K KL++++ N P LRKSEIEYYAMLAK  VHH+ G N +LGT+CG+ FRV  ++I+D GDSDI+
Sbjct:   11 DNVNAKLGLAIKSGKYTLGYKSTIKALRQGKAKLVIIAGNTPALRKSEIEYYAMLAKCTVHHFQGGNNELGTSCGRLFRVGAVTIMDAGDSDIL 104          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30_CANGA (60S ribosomal protein L30 OS=Candida glabrata GN=RPL30 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.022e-27
Identity = 58/97 (59.79%), Postives = 78/97 (80.41%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 410
            ESIN +LALV+KSGK+TLGYK+ ++SLR  K KLI+++ N P LRKSE+EYYAML+K  V+++ G N +LGTA GK FRV  +S++D GDSDI+ +L
Sbjct:    8 ESINQKLALVVKSGKFTLGYKSTIKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSVLDAGDSDILTAL 104          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30_ASHGO (60S ribosomal protein L30 OS=Ashbya gossypii GN=RPL30 PE=3 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 1.743e-27
Identity = 57/97 (58.76%), Postives = 78/97 (80.41%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 410
            E+IN +LALV+KSGKYTLGYK+ ++SLR  K KLI+++ N P LRKSE+EYYAML+K  V+++ G N +LGTA GK FRV  ++++D GDSDI+ +L
Sbjct:    8 ENINQKLALVIKSGKYTLGYKSTIKSLRQGKAKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVTVLDAGDSDILTTL 104          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30_LEIMA (60S ribosomal protein L30 OS=Leishmania major GN=RPL30 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.883e-27
Identity = 53/92 (57.61%), Postives = 72/92 (78.26%), Query Frame = 3
Query:  123 SINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398
            +IN +L LVMKSGKY LG +  L +LR  + KL++++NNCPP+R++E+EYY  L+K  +HHY+GNN+DLGTACGK FR   LS+ + GDSDI
Sbjct:   11 TINAKLQLVMKSGKYVLGTQQALTTLRQGRSKLVVIANNCPPIRRAEVEYYCTLSKTPIHHYSGNNLDLGTACGKPFRTCVLSVTNVGDSDI 102          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30_KLULA (60S ribosomal protein L30 OS=Kluyveromyces lactis GN=RPL30 PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.072e-27
Identity = 57/97 (58.76%), Postives = 78/97 (80.41%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 410
            E+IN +LALV+KSGKY+LGYK+ ++SLR  K KLI+++ N P LRKSE+EYYAML+K  V+++ G N +LGTA GK FRV  ++I+D GDSDI+ +L
Sbjct:    8 ENINQKLALVVKSGKYSLGYKSTVKSLRQGKAKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVTILDAGDSDILTAL 104          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_METTH (50S ribosomal protein L30e OS=Methanobacterium thermoautotrophicum GN=rpl30e PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 38/93 (40.86%), Postives = 62/93 (66.67%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIK 404
            I+  + + + +G   LG K  ++SL+  KGKL+++++N P   K +IEYYA L+++ V+ + G +V+LG+ CGK F V  L I DPGDS I++
Sbjct:    3 IDRGIRVAVDTGNVILGSKRTIQSLKLGKGKLVVMASNIPEDLKEDIEYYAKLSEIPVYTHEGTSVELGSVCGKPFTVGALLIQDPGDSTILE 95          
The following BLAST results are available for this feature:
BLAST of CX297716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RL30_NEUCR1.092e-2962.7760S ribosomal protein L30 OS=Neurospora crassa GN=... [more]
RL30_DICDI3.177e-2963.9260S ribosomal protein L30 OS=Dictyostelium discoid... [more]
RL30_TRYBB2.689e-2859.1460S ribosomal protein L30 OS=Trypanosoma brucei br... [more]
RL30_YEAST1.022e-2760.8260S ribosomal protein L30 OS=Saccharomyces cerevis... [more]
RL30_YARLI1.022e-2757.4560S ribosomal protein L30 OS=Yarrowia lipolytica G... [more]
RL30_CANGA1.022e-2759.7960S ribosomal protein L30 OS=Candida glabrata GN=R... [more]
RL30_ASHGO1.743e-2758.7660S ribosomal protein L30 OS=Ashbya gossypii GN=RP... [more]
RL30_LEIMA3.883e-2757.6160S ribosomal protein L30 OS=Leishmania major GN=R... [more]
RL30_KLULA5.072e-2758.7660S ribosomal protein L30 OS=Kluyveromyces lactis ... [more]
RL30E_METTH4.453e-1540.8650S ribosomal protein L30e OS=Methanobacterium the... [more]

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Properties
Property NameValue
Genbank descriptionC06004E02SK RindPdig24 Citrus clementina cDNA clone C06004E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297716 ID=CX297716; Name=CX297716; organism=Citrus clementina; type=EST; length=716bp
CCAAACCCTAAAGCCCATTTCATGTTTTTCTATTGCCTCTAAATTTTCTG
TGTCATCTGATTTTCCAGGCAACCAAACAGTCGAAAATGGTTACAAGCAA
GAAGACGAAGAAGACTCATGAGAGCATCAACAACAGGCTTGCTCTTGTGA
TGAAGAGTGGCAAATACACTCTTGGTTACAAAACTGTTCTTCGATCTCTC
AGAAGCTCTAAGGGAAAGTTGATTCTTTTGTCAAATAATTGCCCACCGTT
GAGAAAATCAGAGATTGAGTACTATGCTATGCTTGCTAAAGTTGGTGTAC
ACCACTACAATGGAAACAATGTCGATTTGGGAACAGCATGTGGAAAGTAC
TTCCGTGTGTCTTGCTTGAGCATTATCGATCCAGGTGATTCTGATATCAT
CAAGTCACTTCCGGGAGAGCACTGAGCCTGATTCAGAGTTCAAACCTGCA
TCTTAGTGTTCTGATTGTTTAATTGTGGAATGCTGTTTCTCAATTGAAAT
TTTCTTTTGAACATCCTCGAGATACACTTTCTTATATAGTCCAATTTGGA
ATGTCGTGCTGAATGTTTTGTATGTTTTTAATTCTGCAATTTTGGATCTA
TTAACCTTTGCTCACGTCTTGATTTATTGTTGTACCGGAGTTTTAGGTTC
TATGAACTTATTATATTTTTAGAATCTAGCTTAGAATTTCAGTTGTTCAT
ATAAAATTTAAAGAAG
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