CX297716

Overview
NameCX297716
Unique NameCX297716
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_PYRIL (50S ribosomal protein L30e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl30e PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.444e-13
Identity = 34/93 (36.56%), Postives = 61/93 (65.59%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIK 404
            I+  L + + +GK  +G+K V +++ +S  KL++L+ N P   K ++EYYA LA V V  + G++++LG A  +  ++  L++IDPG S+I+K
Sbjct:    4 ISRELQVAISTGKVVMGFKEVKKTILTSTPKLVILAANAPKWAKEDVEYYAKLAGVPVFIFPGSSIELGAAAKRPHKIMALAVIDPGQSEILK 96          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_METKA (50S ribosomal protein L30e OS=Methanopyrus kandleri GN=rpl30e PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 33/97 (34.02%), Postives = 61/97 (62.89%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 410
            + I  ++ + +++G   LG    ++ L+  K KL++++ NCP   + +IEYYA LA V V  Y G ++DLG  CG+   V+ ++++D G+SD+I ++
Sbjct:    2 QEIERQIRMAVETGDVVLGSNQTIKLLKLGKPKLVIVAANCPAEIREDIEYYAELADVPVFVYPGTSMDLGDVCGRPHVVASMAVLDDGESDLIATV 98          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_SULSO (50S ribosomal protein L30e OS=Sulfolobus solfataricus GN=rpl30e PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 35/93 (37.63%), Postives = 57/93 (61.29%), Query Frame = 3
Query:  123 SINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 401
            S    L  ++K+GK   G K  ++ ++ SK K++++++      K +I +YA L+ + V+ Y G+  DLGT CGK F +S +SIID GDS I+
Sbjct:   10 SFEGELKSLLKTGKVIFGAKRAIKYIKLSKVKMVIVASTLRGDLKQDIMHYAKLSNIPVYEYKGSGWDLGTLCGKPFMISTISIIDEGDSKIL 102          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_METS3 (50S ribosomal protein L30e OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl30e PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 33/95 (34.74%), Postives = 60/95 (63.16%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 410
            ++  + + + +G  TLG +  ++SL+  KG+L++++ N P     ++EYY  L+ +  + Y G++V+LG+ CGK F V+ L + DPGDS I+  L
Sbjct:    4 VDRSIRVAVDTGDVTLGSEKSIQSLKLGKGQLVIVAANTPKDIVEDVEYYTNLSDIPSYTYEGSSVELGSVCGKPFTVATLIVNDPGDSTILDDL 98          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_PYRFU (50S ribosomal protein L30e OS=Pyrococcus furiosus GN=rpl30e PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 35/88 (39.77%), Postives = 55/88 (62.50%), Query Frame = 3
Query:  138 LALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 401
            L   M++GK  LG    +R  ++   KLI+++ N P   K +I YYA L+ + V+ + G +V+LGT  GK F V+ L+I+DPG+S I+
Sbjct:    7 LRKAMETGKVVLGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPGESKIL 94          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_THESM (50S ribosomal protein L30e OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl30e PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 32/94 (34.04%), Postives = 58/94 (61.70%), Query Frame = 3
Query:  138 LALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGE 419
            L   +++GK  +G    +R  R+ + KLI+++ N P   K +I YYA L+ + V+ + G +V+LGT  GK F ++ ++I++PG+S I+    G+
Sbjct:    7 LRKAIETGKVVIGSNETMRLARTGEAKLIIMAKNAPKEVKDDINYYAGLSSIPVYEFEGTSVELGTLLGKPFVIALMAIVEPGESKILSLAGGK 100          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_AERPE (50S ribosomal protein L30e OS=Aeropyrum pernix GN=rpl30e PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 32/94 (34.04%), Postives = 59/94 (62.77%), Query Frame = 3
Query:  123 SINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIK 404
            S+   L  ++K+G Y +G+K  L+++++ + K I+++ N PP  + ++EYYA LA + +  Y G  +D+G   G+   VS L++ID G S I++
Sbjct:    2 SVEKALKDLVKTGVYAMGFKQSLKAVKAGEAKAIVIAENTPPELRRKLEYYAKLAGIPIIVYRGTRMDMGLVMGRRHGVSVLAVIDEGSSRILE 95          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_PYRHO (50S ribosomal protein L30e OS=Pyrococcus horikoshii GN=rpl30e PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 3
Query:  138 LALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 401
            L   +++GK  LG    +R  ++   KLI+++ N P   K +I YYA L+ + V+ + G +V+LGT  GK F V+ L+I+DPG+S I+
Sbjct:    7 LKKALETGKVILGSNETIRLAKTGGAKLIIVARNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPGESRIL 94          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_PYRAB (50S ribosomal protein L30e OS=Pyrococcus abyssi GN=rpl30e PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 3
Query:  138 LALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 401
            L   +++GK  LG    +R  ++   KLI+++ N P   K +I YYA L+ + V+ + G +V+LGT  GK F V+ L+I+DPG+S I+
Sbjct:    7 LRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPGESRIL 94          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_METVS (50S ribosomal protein L30e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl30e PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 30/92 (32.61%), Postives = 57/92 (61.96%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 401
            IN  + + + +G   LG K  +++++  +GKL++++ NC    K +I YY  L++  V+ +   +++LG  CGK F VS L +++PG+S I+
Sbjct:    9 INRAIRVAVDTGNVVLGTKQAIKNIKHGEGKLVIIAGNCAKDVKEDIFYYTKLSETPVYTHQVTSIELGAICGKPFPVSALLVLEPGNSAIL 100          
The following BLAST results are available for this feature:
BLAST of CX297716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RL30E_PYRIL2.444e-1336.5650S ribosomal protein L30e OS=Pyrobaculum islandic... [more]
RL30E_METKA9.286e-1334.0250S ribosomal protein L30e OS=Methanopyrus kandler... [more]
RL30E_SULSO2.069e-1237.6350S ribosomal protein L30e OS=Sulfolobus solfatari... [more]
RL30E_METS32.069e-1234.7450S ribosomal protein L30e OS=Methanobrevibacter s... [more]
RL30E_PYRFU2.702e-1239.7750S ribosomal protein L30e OS=Pyrococcus furiosus ... [more]
RL30E_THESM6.019e-1234.0450S ribosomal protein L30e OS=Thermococcus sibiric... [more]
RL30E_AERPE6.019e-1234.0450S ribosomal protein L30e OS=Aeropyrum pernix GN=... [more]
RL30E_PYRHO1.027e-1138.6450S ribosomal protein L30e OS=Pyrococcus horikoshi... [more]
RL30E_PYRAB1.027e-1138.6450S ribosomal protein L30e OS=Pyrococcus abyssi GN... [more]
RL30E_METVS1.341e-1132.6150S ribosomal protein L30e OS=Methanococcus vannie... [more]

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Properties
Property NameValue
Genbank descriptionC06004E02SK RindPdig24 Citrus clementina cDNA clone C06004E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297716 ID=CX297716; Name=CX297716; organism=Citrus clementina; type=EST; length=716bp
CCAAACCCTAAAGCCCATTTCATGTTTTTCTATTGCCTCTAAATTTTCTG
TGTCATCTGATTTTCCAGGCAACCAAACAGTCGAAAATGGTTACAAGCAA
GAAGACGAAGAAGACTCATGAGAGCATCAACAACAGGCTTGCTCTTGTGA
TGAAGAGTGGCAAATACACTCTTGGTTACAAAACTGTTCTTCGATCTCTC
AGAAGCTCTAAGGGAAAGTTGATTCTTTTGTCAAATAATTGCCCACCGTT
GAGAAAATCAGAGATTGAGTACTATGCTATGCTTGCTAAAGTTGGTGTAC
ACCACTACAATGGAAACAATGTCGATTTGGGAACAGCATGTGGAAAGTAC
TTCCGTGTGTCTTGCTTGAGCATTATCGATCCAGGTGATTCTGATATCAT
CAAGTCACTTCCGGGAGAGCACTGAGCCTGATTCAGAGTTCAAACCTGCA
TCTTAGTGTTCTGATTGTTTAATTGTGGAATGCTGTTTCTCAATTGAAAT
TTTCTTTTGAACATCCTCGAGATACACTTTCTTATATAGTCCAATTTGGA
ATGTCGTGCTGAATGTTTTGTATGTTTTTAATTCTGCAATTTTGGATCTA
TTAACCTTTGCTCACGTCTTGATTTATTGTTGTACCGGAGTTTTAGGTTC
TATGAACTTATTATATTTTTAGAATCTAGCTTAGAATTTCAGTTGTTCAT
ATAAAATTTAAAGAAG
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