CX297716
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_PYRIL (50S ribosomal protein L30e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl30e PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.444e-13 Identity = 34/93 (36.56%), Postives = 61/93 (65.59%), Query Frame = 3 Query: 126 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIK 404 I+ L + + +GK +G+K V +++ +S KL++L+ N P K ++EYYA LA V V + G++++LG A + ++ L++IDPG S+I+K Sbjct: 4 ISRELQVAISTGKVVMGFKEVKKTILTSTPKLVILAANAPKWAKEDVEYYAKLAGVPVFIFPGSSIELGAAAKRPHKIMALAVIDPGQSEILK 96
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_METKA (50S ribosomal protein L30e OS=Methanopyrus kandleri GN=rpl30e PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13 Identity = 33/97 (34.02%), Postives = 61/97 (62.89%), Query Frame = 3 Query: 120 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 410 + I ++ + +++G LG ++ L+ K KL++++ NCP + +IEYYA LA V V Y G ++DLG CG+ V+ ++++D G+SD+I ++ Sbjct: 2 QEIERQIRMAVETGDVVLGSNQTIKLLKLGKPKLVIVAANCPAEIREDIEYYAELADVPVFVYPGTSMDLGDVCGRPHVVASMAVLDDGESDLIATV 98
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_SULSO (50S ribosomal protein L30e OS=Sulfolobus solfataricus GN=rpl30e PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12 Identity = 35/93 (37.63%), Postives = 57/93 (61.29%), Query Frame = 3 Query: 123 SINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 401 S L ++K+GK G K ++ ++ SK K++++++ K +I +YA L+ + V+ Y G+ DLGT CGK F +S +SIID GDS I+ Sbjct: 10 SFEGELKSLLKTGKVIFGAKRAIKYIKLSKVKMVIVASTLRGDLKQDIMHYAKLSNIPVYEYKGSGWDLGTLCGKPFMISTISIIDEGDSKIL 102
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_METS3 (50S ribosomal protein L30e OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl30e PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12 Identity = 33/95 (34.74%), Postives = 60/95 (63.16%), Query Frame = 3 Query: 126 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 410 ++ + + + +G TLG + ++SL+ KG+L++++ N P ++EYY L+ + + Y G++V+LG+ CGK F V+ L + DPGDS I+ L Sbjct: 4 VDRSIRVAVDTGDVTLGSEKSIQSLKLGKGQLVIVAANTPKDIVEDVEYYTNLSDIPSYTYEGSSVELGSVCGKPFTVATLIVNDPGDSTILDDL 98
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_PYRFU (50S ribosomal protein L30e OS=Pyrococcus furiosus GN=rpl30e PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12 Identity = 35/88 (39.77%), Postives = 55/88 (62.50%), Query Frame = 3 Query: 138 LALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 401 L M++GK LG +R ++ KLI+++ N P K +I YYA L+ + V+ + G +V+LGT GK F V+ L+I+DPG+S I+ Sbjct: 7 LRKAMETGKVVLGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPGESKIL 94
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_THESM (50S ribosomal protein L30e OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl30e PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12 Identity = 32/94 (34.04%), Postives = 58/94 (61.70%), Query Frame = 3 Query: 138 LALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGE 419 L +++GK +G +R R+ + KLI+++ N P K +I YYA L+ + V+ + G +V+LGT GK F ++ ++I++PG+S I+ G+ Sbjct: 7 LRKAIETGKVVIGSNETMRLARTGEAKLIIMAKNAPKEVKDDINYYAGLSSIPVYEFEGTSVELGTLLGKPFVIALMAIVEPGESKILSLAGGK 100
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_AERPE (50S ribosomal protein L30e OS=Aeropyrum pernix GN=rpl30e PE=3 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12 Identity = 32/94 (34.04%), Postives = 59/94 (62.77%), Query Frame = 3 Query: 123 SINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIK 404 S+ L ++K+G Y +G+K L+++++ + K I+++ N PP + ++EYYA LA + + Y G +D+G G+ VS L++ID G S I++ Sbjct: 2 SVEKALKDLVKTGVYAMGFKQSLKAVKAGEAKAIVIAENTPPELRRKLEYYAKLAGIPIIVYRGTRMDMGLVMGRRHGVSVLAVIDEGSSRILE 95
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_PYRHO (50S ribosomal protein L30e OS=Pyrococcus horikoshii GN=rpl30e PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11 Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 3 Query: 138 LALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 401 L +++GK LG +R ++ KLI+++ N P K +I YYA L+ + V+ + G +V+LGT GK F V+ L+I+DPG+S I+ Sbjct: 7 LKKALETGKVILGSNETIRLAKTGGAKLIIVARNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPGESRIL 94
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_PYRAB (50S ribosomal protein L30e OS=Pyrococcus abyssi GN=rpl30e PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11 Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 3 Query: 138 LALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 401 L +++GK LG +R ++ KLI+++ N P K +I YYA L+ + V+ + G +V+LGT GK F V+ L+I+DPG+S I+ Sbjct: 7 LRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPGESRIL 94
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_METVS (50S ribosomal protein L30e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl30e PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11 Identity = 30/92 (32.61%), Postives = 57/92 (61.96%), Query Frame = 3 Query: 126 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 401 IN + + + +G LG K +++++ +GKL++++ NC K +I YY L++ V+ + +++LG CGK F VS L +++PG+S I+ Sbjct: 9 INRAIRVAVDTGNVVLGTKQAIKNIKHGEGKLVIIAGNCAKDVKEDIFYYTKLSETPVYTHQVTSIELGAICGKPFPVSALLVLEPGNSAIL 100 The following BLAST results are available for this feature:
BLAST of CX297716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 50
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Sequences
The
following sequences are available for this feature:
EST sequence >CX297716 ID=CX297716; Name=CX297716; organism=Citrus clementina; type=EST; length=716bpback to top |