CX297716

Overview
NameCX297716
Unique NameCX297716
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_METST (50S ribosomal protein L30e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl30e PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 32/93 (34.41%), Postives = 61/93 (65.59%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIK 404
            I   + + + +GK  LG    +++++   G+L +++ N P   K++IE Y+ L+++ V+ + G++V+LG+ CGK F VS L I +PGDS+I++
Sbjct:    3 IERGIRVAVDTGKVILGSNKAIQAIKLGNGELAIMAENTPKNVKADIEAYSKLSEMPVYTFEGSSVELGSICGKPFTVSVLIIQEPGDSNILE 95          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_METM5 (50S ribosomal protein L30e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl30e PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.751e-11
Identity = 29/92 (31.52%), Postives = 58/92 (63.04%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 401
            IN  + + + +G   LG K  +++++  +G+L+++++NC    K +I YY  L++  V+ +   +++LG  CGK F VS L +++PG+S I+
Sbjct:    9 INRAIRVAVDTGNVVLGTKQAIKNIKHGEGQLVIVADNCAKDVKEDIFYYTKLSETPVYTHQATSIELGAICGKPFPVSALLVLEPGNSAIL 100          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_THENV (50S ribosomal protein L30e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl30e PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 30/93 (32.26%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIK 404
            I+  L + + +GK  +G++   +++ +   KL++L+ N P   + +IEYYA LA V V  + G++++LG A  +  ++  L+++DPG S+I+K
Sbjct:    4 ISRELQVALNTGKVIIGFEETKKAVLAGTPKLVILAANAPKWARGDIEYYAKLAGVPVFIFPGSSIELGAAAKRPHKIMALAVLDPGQSEILK 96          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_SULTO (50S ribosomal protein L30e OS=Sulfolobus tokodaii GN=rpl30e PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 28/93 (30.11%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  132 NRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 410
            + L  ++++GK   G K  ++ +++ K K++++++      K +I  YA ++ + V+ YNG+  +LGT CGK F +S + +IDPG+S +++ +
Sbjct:    9 SELKTLLRTGKVVFGSKKTIKMVKTGKVKMVIIASTLRQDLKDDILAYAKISNIPVYQYNGSAYELGTLCGKPFMISTIGVIDPGESRLLEEI 101          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_METM7 (50S ribosomal protein L30e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl30e PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 28/92 (30.43%), Postives = 58/92 (63.04%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 401
            IN  + + + +G   LG K  +++++  +G+L+++++NC    + +I YY  L++  V+ +   +++LG  CGK F VS L +++PG+S I+
Sbjct:    9 INRAIRVAVDTGNVVLGTKQAIKNIKHGEGQLVIIADNCAKDVREDIFYYTQLSETPVYTHQATSIELGAICGKPFPVSALLVLEPGNSAIL 100          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_METM6 (50S ribosomal protein L30e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl30e PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 28/92 (30.43%), Postives = 58/92 (63.04%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 401
            IN  + + + +G   LG K  +++++  +G+L+++++NC    + +I YY  L++  V+ +   +++LG  CGK F VS L +++PG+S I+
Sbjct:    9 INRAIRVAVDTGNVVLGTKQAIKNIKHGEGQLVIIADNCAKDVREDIFYYTQLSETPVYTHQSTSIELGAICGKPFPVSALLVLEPGNSAIL 100          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_PYRCJ (50S ribosomal protein L30e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl30e PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 30/93 (32.26%), Postives = 57/93 (61.29%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIK 404
            I   L + + +GK  +G +   +SL +   KL++++ N P   + +IEYYA LA V +  + G++++LG A  +  ++  L+++DPG S+I+K
Sbjct:    4 IGRELQVAINTGKVIIGLRETKKSLLTGAPKLVIIAANAPRWAREDIEYYAKLAGVPIFTFPGSSIELGAAAKRPHKIMALAVVDPGQSEILK 96          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_METMP (50S ribosomal protein L30e OS=Methanococcus maripaludis GN=rpl30e PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 28/92 (30.43%), Postives = 58/92 (63.04%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 401
            IN  + + + +G   LG K  +++++  +G+L+++++NC    + +I YY  L++  V+ +   +++LG  CGK F VS L +++PG+S I+
Sbjct:    3 INRAIRVAVDTGNVVLGTKQAIKNIKHGEGQLVIVADNCAKDVREDIFYYTQLSETPVYTHQATSIELGAICGKPFPVSALLVLEPGNSAIL 94          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_PYRAE (50S ribosomal protein L30e OS=Pyrobaculum aerophilum GN=rpl30e PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 31/93 (33.33%), Postives = 58/93 (62.37%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIK 404
            I+  L + + +GK  +G++   ++L +   KLI+L+ N P   + +IEYYA LA V +  + G++++LG A  +  ++  L++ID G S+I+K
Sbjct:    4 ISRELQVAINTGKVVIGFEETKKALLTGAPKLIILAANAPKWARDDIEYYAKLAGVPIFVFPGSSIELGAAAKRPHKIMALAVIDAGQSEILK 96          
BLAST of CX297716 vs. ExPASy Swiss-Prot
Match: RL30E_METJA (50S ribosomal protein L30e OS=Methanocaldococcus jannaschii GN=rpl30e PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 29/93 (31.18%), Postives = 58/93 (62.37%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIK 404
            +N  +   + +GK  LG K  ++ ++  +GKL++L+ N P   + +++YYA L+ + V+ +   +++LG  CGK F V+ L ++D G S+I++
Sbjct:    9 VNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQHKITSLELGAVCGKPFPVAALLVLDEGLSNIME 101          
The following BLAST results are available for this feature:
BLAST of CX297716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RL30E_METST1.341e-1134.4150S ribosomal protein L30e OS=Methanosphaera stadt... [more]
RL30E_METM51.751e-1131.5250S ribosomal protein L30e OS=Methanococcus maripa... [more]
RL30E_THENV2.287e-1132.2650S ribosomal protein L30e OS=Thermoproteus neutro... [more]
RL30E_SULTO2.287e-1130.1150S ribosomal protein L30e OS=Sulfolobus tokodaii ... [more]
RL30E_METM72.287e-1130.4350S ribosomal protein L30e OS=Methanococcus maripa... [more]
RL30E_METM62.287e-1130.4350S ribosomal protein L30e OS=Methanococcus maripa... [more]
RL30E_PYRCJ2.987e-1132.2650S ribosomal protein L30e OS=Pyrobaculum calidifo... [more]
RL30E_METMP2.987e-1130.4350S ribosomal protein L30e OS=Methanococcus maripa... [more]
RL30E_PYRAE5.095e-1133.3350S ribosomal protein L30e OS=Pyrobaculum aerophil... [more]
RL30E_METJA8.691e-1131.1850S ribosomal protein L30e OS=Methanocaldococcus j... [more]

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Properties
Property NameValue
Genbank descriptionC06004E02SK RindPdig24 Citrus clementina cDNA clone C06004E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297716 ID=CX297716; Name=CX297716; organism=Citrus clementina; type=EST; length=716bp
CCAAACCCTAAAGCCCATTTCATGTTTTTCTATTGCCTCTAAATTTTCTG
TGTCATCTGATTTTCCAGGCAACCAAACAGTCGAAAATGGTTACAAGCAA
GAAGACGAAGAAGACTCATGAGAGCATCAACAACAGGCTTGCTCTTGTGA
TGAAGAGTGGCAAATACACTCTTGGTTACAAAACTGTTCTTCGATCTCTC
AGAAGCTCTAAGGGAAAGTTGATTCTTTTGTCAAATAATTGCCCACCGTT
GAGAAAATCAGAGATTGAGTACTATGCTATGCTTGCTAAAGTTGGTGTAC
ACCACTACAATGGAAACAATGTCGATTTGGGAACAGCATGTGGAAAGTAC
TTCCGTGTGTCTTGCTTGAGCATTATCGATCCAGGTGATTCTGATATCAT
CAAGTCACTTCCGGGAGAGCACTGAGCCTGATTCAGAGTTCAAACCTGCA
TCTTAGTGTTCTGATTGTTTAATTGTGGAATGCTGTTTCTCAATTGAAAT
TTTCTTTTGAACATCCTCGAGATACACTTTCTTATATAGTCCAATTTGGA
ATGTCGTGCTGAATGTTTTGTATGTTTTTAATTCTGCAATTTTGGATCTA
TTAACCTTTGCTCACGTCTTGATTTATTGTTGTACCGGAGTTTTAGGTTC
TATGAACTTATTATATTTTTAGAATCTAGCTTAGAATTTCAGTTGTTCAT
ATAAAATTTAAAGAAG
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