CX297720

Overview
NameCX297720
Unique NameCX297720
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297720 vs. ExPASy Swiss-Prot
Match: ALDH2_BOVIN (Aldehyde dehydrogenase, mitochondrial OS=Bos taurus GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 3
Query:   12 LMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAV 161
            L +AL+ G+VW+NC+DVF A  PFGGYK SG GRE G Y L  Y +VK V
Sbjct:  462 LSQALQAGTVWVNCYDVFGAQSPFGGYKLSGSGRELGEYGLQAYTEVKTV 511          
BLAST of CX297720 vs. ExPASy Swiss-Prot
Match: YF19_SCHPO (Putative aldehyde dehydrogenase-like protein C9E9.09c OS=Schizosaccharomyces pombe GN=SPAC9E9.09c PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.217e-11
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 3
Query:   21 ALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAV 161
            AL  G+VW+NC+++    IPFGGYK+SG GRE GSY L+NY Q KAV
Sbjct:  447 ALEAGTVWVNCYNLLHHQIPFGGYKESGIGRELGSYGLTNYTQTKAV 493          
BLAST of CX297720 vs. ExPASy Swiss-Prot
Match: ALDH2_PONAB (Aldehyde dehydrogenase, mitochondrial OS=Pongo abelii GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.202e-11
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 3
Query:   12 LMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAV 161
            L +AL+ G+VW+NC++VF A  PFGGYK SG GRE G Y L  Y +VK V
Sbjct:  459 LSQALQAGTVWVNCYNVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTV 508          
BLAST of CX297720 vs. ExPASy Swiss-Prot
Match: ALDH_AGABI (Aldehyde dehydrogenase OS=Agaricus bisporus GN=aldA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.488e-11
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 3
Query:   21 ALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAV 161
            A + G+ W+NC +  DA +PFGGYKQSG GRE G Y+L NY  VKAV
Sbjct:  446 AFKAGTAWVNCANTIDAGVPFGGYKQSGIGRELGEYALHNYTNVKAV 492          
BLAST of CX297720 vs. ExPASy Swiss-Prot
Match: AL1A3_MOUSE (Aldehyde dehydrogenase family 1 member A3 OS=Mus musculus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 3
Query:   12 LMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTAL--KNP 182
            L  AL  G+VWINC++ F A  PFGG+K SG GRE G Y+L+ Y +VK V   L  KNP
Sbjct:  454 LAAALESGTVWINCYNAFYAQAPFGGFKMSGNGRELGEYALAEYTEVKTVTIKLEEKNP 512          
BLAST of CX297720 vs. ExPASy Swiss-Prot
Match: AL1A3_RAT (Aldehyde dehydrogenase family 1 member A3 OS=Rattus norvegicus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.361e-11
Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 3
Query:   12 LMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTAL--KNP 182
            L  AL  G+VW+NC++ F A  PFGG+K SG GRE G Y+L+ Y +VK V   L  KNP
Sbjct:  454 LASALESGTVWVNCYNAFYAQAPFGGFKMSGNGRELGEYALAEYTEVKTVTIKLDEKNP 512          
BLAST of CX297720 vs. ExPASy Swiss-Prot
Match: AL1A1_RABIT (Retinal dehydrogenase 1 OS=Oryctolagus cuniculus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.361e-11
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 3
Query:    9 TLMRALRVGSVWINCFDVFDAAIPFGGYKQSGQGREKGSYSLSNYLQVKAVVTAL 173
            T+  AL+ G+VW+NC+ V  A +PFGG+K SG GRE G Y L  Y +VK V   +
Sbjct:  437 TVSSALQAGTVWVNCYSVVSAQVPFGGFKMSGNGRELGEYGLQQYTEVKTVTVKI 491          
The following BLAST results are available for this feature:
BLAST of CX297720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
ALDH2_BOVIN1.886e-1160.00Aldehyde dehydrogenase, mitochondrial OS=Bos tauru... [more]
YF19_SCHPO3.217e-1161.70Putative aldehyde dehydrogenase-like protein C9E9.... [more]
ALDH2_PONAB4.202e-1158.00Aldehyde dehydrogenase, mitochondrial OS=Pongo abe... [more]
ALDH_AGABI5.488e-1159.57Aldehyde dehydrogenase OS=Agaricus bisporus GN=ald... [more]
AL1A3_MOUSE7.167e-1154.24Aldehyde dehydrogenase family 1 member A3 OS=Mus m... [more]
AL1A3_RAT9.361e-1152.54Aldehyde dehydrogenase family 1 member A3 OS=Rattu... [more]
AL1A1_RABIT9.361e-1149.09Retinal dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]

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Properties
Property NameValue
Genbank descriptionC06004E06SK RindPdig24 Citrus clementina cDNA clone C06004E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297720 ID=CX297720; Name=CX297720; organism=Citrus clementina; type=EST; length=563bp
GAGGCTATACTCTGATGCGTGCATTGCGAGTAGGGTCGGTGTGGATTAAC
TGCTTTGATGTGTTTGATGCTGCAATTCCCTTTGGTGGATACAAGCAAAG
CGGGCAGGGAAGAGAGAAGGGTTCTTACAGTCTCAGCAATTACCTGCAAG
TCAAGGCTGTTGTTACTGCCCTTAAGAACCCAGCATGGCTTTAGATCTAA
ACCTTCGCAATAAAGTTTTTCAATAACAATTATGTTAAATCAGATGATGC
CGATGAAATCTCGCTTATTTTGTTTCATTATCTCTATGCATCTTTTTCTA
TTTTGTAAGTATAGTCACTATTTTCTTCGTATGCATATTAGAGACTCAAG
TGAGGCAACACTCTTTTTAAGACCTTCGCTTTTCCTTCTTTTTTTTTTCC
CCTCTCTGTCTTAAATCACGAAAAATATTATTAATAAGGATCGTATCCAG
ATCTCAATATTACATTATATGGATATAGATTTTACTGTATATCTGATCAT
GCCGCTTTTTTTATTTTATTTTGTAAATAGAAATACACATTTAATTAAAA
AAAAAAAAAAAAA
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