CX297729

Overview
NameCX297729
Unique NameCX297729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THIKA_CANTR (3-ketoacyl-CoA thiolase A, peroxisomal OS=Candida tropicalis PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.166e-17
Identity = 56/147 (38.10%), Postives = 76/147 (51.70%), Query Frame = 1
Query:  250 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN--PMAWEGSVNPKVKAFEQAQNCLL 684
            DDVVIVAAYRTA+ K  +G F+    + +L   LK  I+KTN+DPS + D+ +G VL   +  A+E R A   AG P T     VNR CSSGL            G  + G+  G ESM+ N         ++P +    Q + CL+
Sbjct:   25 DDVVIVAAYRTAIGKGFKGSFRSVRSEFILTEFLKEFIKKTNIDPSLIEDVAIGNVLNQAA-GATEHRGACLAAGIPYTAAFIAVNRFCSSGLMAISDIANKIKTGEIECGLAGGAESMSTNYRDPRVAPRIDPHLADDAQMEKCLI 170          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THLA_STAAB (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB0304 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.684e-16
Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = 1
Query:  256 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPM 621
            VV+ AAYRT +     G FKD    DL A +++ +I++T ++PSE+ ++++G VL  G Q  +  R+AA   G PETVPV TVN+ C SGL+           G  DI +  G+E+M+ +PM
Sbjct:    4 VVLAAAYRTPIGVFG-GAFKDVPAYDLGATLIEHIIKETGLNPSEINEVIIGNVLQAG-QGQNPARIAAMKGGLPETVPVFTVNKVCGSGLKSIQLAYQSIVTGENDIVLAGGMENMSQSPM 123          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THLA_STAAR (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain MRSA252) GN=SAR0351 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.899e-16
Identity = 48/122 (39.34%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  256 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPM 621
            VV+ AAYRT +     G FKD    DL A +++ +I++T ++PSE+ ++++G VL  G Q  +  R+AA   G PETVP  TVN+ C SGL+           G  DI +  G+E+M+ +PM
Sbjct:    4 VVLAAAYRTPIGVFG-GAFKDVPAYDLGATLIEHIIKETGLNPSEINEVIIGNVLQAG-QGQNPARIAAMKGGLPETVPAFTVNKVCGSGLKSIQLAYQSIVTGENDIVLAGGMENMSQSPM 123          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THLA_STAAW (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain MW2) GN=MW0330 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.399e-16
Identity = 48/122 (39.34%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  256 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPM 621
            VV+ AAYRT +     G FKD    DL A +++ +I++T ++PSE+ ++++G VL  G Q  +  R+AA   G PETVP  TVN+ C SGL+           G  DI +  G+E+M+ +PM
Sbjct:    4 VVLAAAYRTPIGVFG-GAFKDVPAYDLGATLIEHIIKETGLNPSEIDEVIIGNVLQAG-QGQNPARIAAMKGGLPETVPAFTVNKVCGSGLKSIQLAYQSIVTGENDIVLAGGMENMSQSPM 123          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THLA_STAAS (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain MSSA476) GN=SAS0330 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.399e-16
Identity = 48/122 (39.34%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  256 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPM 621
            VV+ AAYRT +     G FKD    DL A +++ +I++T ++PSE+ ++++G VL  G Q  +  R+AA   G PETVP  TVN+ C SGL+           G  DI +  G+E+M+ +PM
Sbjct:    4 VVLAAAYRTPIGVFG-GAFKDVPAYDLGATLIEHIIKETGLNPSEIDEVIIGNVLQAG-QGQNPARIAAMKGGLPETVPAFTVNKVCGSGLKSIQLAYQSIVTGENDIVLAGGMENMSQSPM 123          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THLA_STAAN (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain N315) GN=SA0342 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.399e-16
Identity = 48/122 (39.34%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  256 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPM 621
            VV+ AAYRT +     G FKD    DL A +++ +I++T ++PSE+ ++++G VL  G Q  +  R+AA   G PETVP  TVN+ C SGL+           G  DI +  G+E+M+ +PM
Sbjct:    4 VVLAAAYRTPIGVFG-GAFKDVPAYDLGATLIEHIIKETGLNPSEIDEVIIGNVLQAG-QGQNPARIAAMKGGLPETVPAFTVNKVCGSGLKSIQLAYQSIVTGENDIVLAGGMENMSQSPM 123          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THLA_STAAM (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV0354 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.399e-16
Identity = 48/122 (39.34%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  256 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPM 621
            VV+ AAYRT +     G FKD    DL A +++ +I++T ++PSE+ ++++G VL  G Q  +  R+AA   G PETVP  TVN+ C SGL+           G  DI +  G+E+M+ +PM
Sbjct:    4 VVLAAAYRTPIGVFG-GAFKDVPAYDLGATLIEHIIKETGLNPSEIDEVIIGNVLQAG-QGQNPARIAAMKGGLPETVPAFTVNKVCGSGLKSIQLAYQSIVTGENDIVLAGGMENMSQSPM 123          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THLA_STAAC (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain COL) GN=SACOL0426 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.399e-16
Identity = 48/122 (39.34%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  256 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPM 621
            VV+ AAYRT +     G FKD    DL A +++ +I++T ++PSE+ ++++G VL  G Q  +  R+AA   G PETVP  TVN+ C SGL+           G  DI +  G+E+M+ +PM
Sbjct:    4 VVLAAAYRTPIGVFG-GAFKDVPAYDLGATLIEHIIKETGLNPSEIDEVIIGNVLQAG-QGQNPARIAAMKGGLPETVPAFTVNKVCGSGLKSIQLAYQSIVTGENDIVLAGGMENMSQSPM 123          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THLA_STAA8 (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_00336 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.399e-16
Identity = 48/122 (39.34%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  256 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPM 621
            VV+ AAYRT +     G FKD    DL A +++ +I++T ++PSE+ ++++G VL  G Q  +  R+AA   G PETVP  TVN+ C SGL+           G  DI +  G+E+M+ +PM
Sbjct:    4 VVLAAAYRTPIGVFG-GAFKDVPAYDLGATLIEHIIKETGLNPSEIDEVIIGNVLQAG-QGQNPARIAAMKGGLPETVPAFTVNKVCGSGLKSIQLAYQSIVTGENDIVLAGGMENMSQSPM 123          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THLA_STAA3 (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_0355 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.399e-16
Identity = 48/122 (39.34%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  256 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPM 621
            VV+ AAYRT +     G FKD    DL A +++ +I++T ++PSE+ ++++G VL  G Q  +  R+AA   G PETVP  TVN+ C SGL+           G  DI +  G+E+M+ +PM
Sbjct:    4 VVLAAAYRTPIGVFG-GAFKDVPAYDLGATLIEHIIKETGLNPSEIDEVIIGNVLQAG-QGQNPARIAAMKGGLPETVPAFTVNKVCGSGLKSIQLAYQSIVTGENDIVLAGGMENMSQSPM 123          
The following BLAST results are available for this feature:
BLAST of CX297729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
THIKA_CANTR1.166e-1738.103-ketoacyl-CoA thiolase A, peroxisomal OS=Candida ... [more]
THLA_STAAB1.684e-1640.16Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAAR4.899e-1639.34Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAAW6.399e-1639.34Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAAS6.399e-1639.34Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAAN6.399e-1639.34Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAAM6.399e-1639.34Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAAC6.399e-1639.34Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAA86.399e-1639.34Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAA36.399e-1639.34Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]

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Properties
Property NameValue
Genbank descriptionC06004F04SK RindPdig24 Citrus clementina cDNA clone C06004F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297729 ID=CX297729; Name=CX297729; organism=Citrus clementina; type=EST; length=686bp
CCAAGGGAAAAAAAACATTCAAAGCTAAACGCTAAAAGGATCAAAAAGGA
AAAAAAAAAAAAGAAAAAAAGGATCCAATATTTTCGAATCAAACGAGAAA
TAATGGAGAAAGCAATCAACAGACAGCAAGTGTTGCTCGAACATCTTCGC
CCTTCTAATTCCTCCTCTCACAATTACGAGTCTATTCTCTCCGCGTCGGC
ATGTGCAGCTGGAGATAGCGCGGCGTATCATAGGACGTCTGTGTACGGTG
ATGATGTGGTGATTGTGGCAGCTTATAGGACTGCACTTTGCAAATCAAAA
CGAGGTGGTTTCAAGGACACTTATCCTGATGATCTGCTTGCACCTGTTTT
GAAGGCAGTGATAGAAAAAACAAATGTAGATCCAAGTGAAGTTGGAGACA
TTGTTGTGGGTACAGTTTTGGCACCAGGGTCTCAAAGAGCAAGTGAATGC
AGGATGGCTGCATTCTATGCTGGTTTCCCTGAAACTGTGCCTGTTAGAAC
TGTGAACAGGCAGTGCTCTTCTGGGCTTCAGGCTGTTGCTGATGTTGCTG
CTGCTATTAAAGCTGGCTTTTATGACATTGGTATTGGTGCTGGGCTGGAA
TCCATGACAGTCAATCCAATGGCTTGGGAAGGATCAGTAAATCCAAAAGT
AAAAGCCTTTGAACAAGCCCAGAATTGCCTCCTTCC
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