CX297729

Overview
NameCX297729
Unique NameCX297729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: FADA_CHRSD (3-ketoacyl-CoA thiolase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=fadA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.432e-15
Identity = 48/137 (35.04%), Postives = 70/137 (51.09%), Query Frame = 1
Query:  253 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKT-NVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAF 660
            D+V+V A RTA+ K+K G F++   ++L A V++A+ ++  N+ P+EV D++ G V     Q  +  R AA   G P TVP +TVNR C S +            G  D  I  G+E M   PM     VNP    +
Sbjct:    7 DIVVVDAVRTAMAKAKHGAFRNVRAENLSAAVMQALFDRNANLVPAEVDDVIWGCVNQTLEQSMNIARNAAIMTGIPRTVPAQTVNRLCGSSMSALHIATANIKAGMGDFYIIGGVEHMEHVPMTHGVDVNPAASKY 143          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THIK_ENCCU (3-ketoacyl-CoA thiolase, peroxisomal OS=Encephalitozoon cuniculi GN=FOX3 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.176e-15
Identity = 46/145 (31.72%), Postives = 77/145 (53.10%), Query Frame = 1
Query:  250 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLL 684
            +DVV+V A RT + ++ RG  +    D+L+   ++ +IEKT +DP  + ++++G  L+      +  RM    AG P   PV  +NR C SGL+           G  +IG+  G ESMT   +  E +++ +  A E A++C+L
Sbjct:    5 EDVVVVGALRTPIGRATRGKLRSLRNDELVTAAIRGIIEKTGIDPRLIEEVILGHCLSSMEGNVA-ARMGVLRAGVPVETPVMIINRLCGSGLESVGLIAEKIRSGRIEIGLAGGFESMTSYGLPKEYTLS-RGGACEDAEDCML 147          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THLA_STAES (Probable acetyl-CoA acyltransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_2384 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.207e-14
Identity = 46/127 (36.22%), Postives = 72/127 (56.69%), Query Frame = 1
Query:  256 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 636
            +V+  AYRT +     G FKD    +L A V++ ++E + +DP+E+ ++++G VL  G Q  +  R+AA + G PE VP  TVN+ C SGL+           G  +I I  G+ESM+ +PM  + S
Sbjct:    4 IVLAEAYRTPIGVFG-GVFKDIPAYELGATVIRQILEHSQIDPNEINEVILGNVLQAG-QGQNPARIAAIHGGVPEAVPSFTVNKVCGSGLKAIQLAYQSIVAGDNEIVIAGGMESMSQSPMLLKNS 128          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THLA_STAEQ (Probable acetyl-CoA acyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0032 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.207e-14
Identity = 46/127 (36.22%), Postives = 72/127 (56.69%), Query Frame = 1
Query:  256 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 636
            +V+  AYRT +     G FKD    +L A V++ ++E + +DP+E+ ++++G VL  G Q  +  R+AA + G PE VP  TVN+ C SGL+           G  +I I  G+ESM+ +PM  + S
Sbjct:    4 IVLAEAYRTPIGVFG-GVFKDIPAYELGATVIRQILEHSQIDPNEINEVILGNVLQAG-QGQNPARIAAIHGGVPEAVPSFTVNKVCGSGLKAIQLAYQSIVAGDNEIVIAGGMESMSQSPMLLKNS 128          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THIL_CHRVO (Acetyl-CoA acetyltransferase OS=Chromobacterium violaceum GN=phaA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.058e-14
Identity = 51/128 (39.84%), Postives = 69/128 (53.91%), Query Frame = 1
Query:  253 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 636
            +V IVAA RTA+  S  GG       +L A V+KA++EKT V P +V ++++G VL  GS + +  R A   AG P T P  T+N  C SGL+           G  DI I  G ESM+++P    GS
Sbjct:    2 EVAIVAAQRTAI-GSFGGGLAKIPAPELGATVIKALLEKTGVKPEDVSEVILGQVLTAGSGQ-NPARQALIKAGLPVTTPATTLNVVCGSGLRAVHLAAQAILAGDADIVIAGGQESMSLSPHILPGS 127          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: FADA_BACSU (3-ketoacyl-CoA thiolase OS=Bacillus subtilis GN=fadA PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 44/123 (35.77%), Postives = 59/123 (47.97%), Query Frame = 1
Query:  253 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPM 621
            + VIV+  RT + K+K+G      PDDL A  +K  +++       + D+++G       Q  +  R     AG P TVP  TVNR CSSGLQ           G YD  I  G ESM+  PM
Sbjct:    3 EAVIVSGARTPVGKAKKGSLATVRPDDLGAICVKETLKRAGGYEGNIDDLIIGCATPEAEQGLNMARNIGALAGLPYTVPAITVNRYCSSGLQSIAYAAEKIMLGAYDTAIAGGAESMSQVPM 125          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THIK_YEAST (3-ketoacyl-CoA thiolase, peroxisomal OS=Saccharomyces cerevisiae GN=FOX3 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 56/154 (36.36%), Postives = 78/154 (50.65%), Query Frame = 1
Query:  250 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVI----EKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMT-----VNPMAWEGSVNPKVKAFEQAQNCLL 684
            +DVVIVAA R+A+ K  +G FKD   D LL   L   I    E    D + + ++  G VL  G+  A+E R A   +G P + P   +NRQCSSGL            G  DIG+  G+ESMT     VNP+    S   +++   +A+ CL+
Sbjct:   34 EDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNVLNVGAG-ATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTNNYKNVNPLGMISS--EELQKNREAKKCLI 184          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THIL_RALEH (Acetyl-CoA acetyltransferase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=phbA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 49/129 (37.98%), Postives = 69/129 (53.49%), Query Frame = 1
Query:  253 DVVIVAAYRTALCKSKRGGFKDTYP-DDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 636
            DVVIV+A RTA+   K GG     P  +L A V+KA +E+  V P +V ++++G VL  GS + +  R AA  AG P  VP  T+N+ C SGL+           G  +I +  G E+M+  P    GS
Sbjct:    3 DVVIVSAARTAV--GKFGGSLAKIPAPELGAVVIKAALERAGVKPEQVSEVIMGQVLTAGSGQ-NPARQAAIKAGLPAMVPAMTINKVCGSGLKAVMLAANAIMAGDAEIVVAGGQENMSAAPHVLPGS 128          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: FADA_ALISL (3-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida (strain LFI1238) GN=fadA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 46/124 (37.10%), Postives = 66/124 (53.23%), Query Frame = 1
Query:  253 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKT-NVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPM 621
            +VVIV   RT + +SK G F+ T  +DL A ++K ++E+  NVDP+++ DI  G V     Q  +  R A+  AG P+++   TVNR C S +Q           G  DI I  G+E M   PM
Sbjct:    3 NVVIVDCIRTPMGRSKNGVFRHTRAEDLSAHLMKGLLERNPNVDPNQIEDIYWGCVQQTLEQGFNIARNASLLAGLPKSIAATTVNRLCGSSMQALHDASRAIMVGDADICIIGGVEHMGHVPM 126          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: FADA_AERHH (3-ketoacyl-CoA thiolase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 47/125 (37.60%), Postives = 66/125 (52.80%), Query Frame = 1
Query:  253 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKT-NVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMA 624
            DVVIV   RT + +SK G F++   +DL A ++K+++ +  N+DP+E+ DI  G V     Q  +  R AA  AG P+ V   TVNR C S +Q           G  DI I  G+E M   PM+
Sbjct:    3 DVVIVDCIRTPMGRSKGGAFRNVRAEDLSAHLMKSILLRNPNLDPNEIEDIYWGCVQQTLEQGFNIARNAALLAGIPKQVGAVTVNRLCGSSMQALHDASRAIQVGDGDIFIIGGVEHMGHVPMS 127          
The following BLAST results are available for this feature:
BLAST of CX297729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
FADA_CHRSD2.432e-1535.043-ketoacyl-CoA thiolase OS=Chromohalobacter salexi... [more]
THIK_ENCCU3.176e-1531.723-ketoacyl-CoA thiolase, peroxisomal OS=Encephalit... [more]
THLA_STAES1.207e-1436.22Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAEQ1.207e-1436.22Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THIL_CHRVO2.058e-1439.84Acetyl-CoA acetyltransferase OS=Chromobacterium vi... [more]
FADA_BACSU5.989e-1435.773-ketoacyl-CoA thiolase OS=Bacillus subtilis GN=fa... [more]
THIK_YEAST1.022e-1336.363-ketoacyl-CoA thiolase, peroxisomal OS=Saccharomy... [more]
THIL_RALEH2.276e-1337.98Acetyl-CoA acetyltransferase OS=Ralstonia eutropha... [more]
FADA_ALISL1.475e-1237.103-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida ... [more]
FADA_AERHH3.286e-1237.603-ketoacyl-CoA thiolase OS=Aeromonas hydrophila su... [more]

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Properties
Property NameValue
Genbank descriptionC06004F04SK RindPdig24 Citrus clementina cDNA clone C06004F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297729 ID=CX297729; Name=CX297729; organism=Citrus clementina; type=EST; length=686bp
CCAAGGGAAAAAAAACATTCAAAGCTAAACGCTAAAAGGATCAAAAAGGA
AAAAAAAAAAAAGAAAAAAAGGATCCAATATTTTCGAATCAAACGAGAAA
TAATGGAGAAAGCAATCAACAGACAGCAAGTGTTGCTCGAACATCTTCGC
CCTTCTAATTCCTCCTCTCACAATTACGAGTCTATTCTCTCCGCGTCGGC
ATGTGCAGCTGGAGATAGCGCGGCGTATCATAGGACGTCTGTGTACGGTG
ATGATGTGGTGATTGTGGCAGCTTATAGGACTGCACTTTGCAAATCAAAA
CGAGGTGGTTTCAAGGACACTTATCCTGATGATCTGCTTGCACCTGTTTT
GAAGGCAGTGATAGAAAAAACAAATGTAGATCCAAGTGAAGTTGGAGACA
TTGTTGTGGGTACAGTTTTGGCACCAGGGTCTCAAAGAGCAAGTGAATGC
AGGATGGCTGCATTCTATGCTGGTTTCCCTGAAACTGTGCCTGTTAGAAC
TGTGAACAGGCAGTGCTCTTCTGGGCTTCAGGCTGTTGCTGATGTTGCTG
CTGCTATTAAAGCTGGCTTTTATGACATTGGTATTGGTGCTGGGCTGGAA
TCCATGACAGTCAATCCAATGGCTTGGGAAGGATCAGTAAATCCAAAAGT
AAAAGCCTTTGAACAAGCCCAGAATTGCCTCCTTCC
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