CX297729

Overview
NameCX297729
Unique NameCX297729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: ATOB_PSEAE (Acetyl-CoA acetyltransferase OS=Pseudomonas aeruginosa GN=atoB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 44/128 (34.38%), Postives = 70/128 (54.69%), Query Frame = 1
Query:  253 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 636
            DVVIVAA RTA+  S +G        +L A V++ ++E+T +D  +V ++++G VL  GS + +  R AA  AG P  VP  T+N+ C SGL+           G  ++ +  G E+M++ P    G+
Sbjct:    3 DVVIVAATRTAV-GSFQGSLAGIPAPELGAAVIRRLLEQTGLDAGQVDEVILGQVLTAGSGQ-NPARQAAIKAGLPVGVPAMTLNKVCGSGLKALHLGAQAIRCGDAEVIVAGGQENMSLAPYVMPGA 128          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THIL_THIVI (Acetyl-CoA acetyltransferase OS=Thiocystis violacea GN=phbA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 47/132 (35.61%), Postives = 67/132 (50.76%), Query Frame = 1
Query:  250 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMT----VNPMAWEG 633
            D +VIV A RTA+  +  G        D+   VLKA+IE+T + P +V ++++G VL  G  + +  R     AG P TVP  T+N+ C SGL+           G  +I I  G ESM+    V P + EG
Sbjct:    3 DTIVIVDAGRTAI-GTFGGALSALQATDIGTTVLKALIERTGIAPEQVSEVILGQVLTAGCGQ-NPARQTTLMAGLPHTVPAMTINKVCGSGLKAVHLAMQAVACGDAEIVIAGGQESMSQSSHVLPRSREG 132          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: FADA_PSYCK (3-ketoacyl-CoA thiolase OS=Psychrobacter cryohalolentis (strain K5) GN=fadA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 46/144 (31.94%), Postives = 72/144 (50.00%), Query Frame = 1
Query:  253 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKV-KAFEQAQNCL 681
            DVVIV   R+A+ K+K G F+    D + A +++A++E+ + DP +V DI+ G V     Q  +  R     AG P+T   +T+NR C S +Q           G  D+ I  G+E M    M     +NP+  K + +A N +
Sbjct:    8 DVVIVDGVRSAMGKTKNGMFRHVRADSMSAELVRALVERNDFDPRDVEDIIWGCVNQTLEQGLNIGRNIGLLAGIPKTAGGQTINRLCGSSMQALHTAAAQIMTGQGDVFIIGGVEHMGHVGMMHGVDLNPEASKHYAKASNMM 151          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: FADA_PSYA2 (3-ketoacyl-CoA thiolase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=fadA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 47/144 (32.64%), Postives = 72/144 (50.00%), Query Frame = 1
Query:  253 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKV-KAFEQAQNCL 681
            DVVIV   R+A+ K+K G F+    D + A +++A++E+ + DP +V DI+ G V     Q  +  R     AG P+T   +TVNR C S +Q           G  D+ I  G+E M    M     +NP+  K + +A N +
Sbjct:    8 DVVIVDGVRSAMGKTKNGMFRHVRADSMSAELVRALVERNDFDPRDVEDIIWGCVNQTLEQGLNIGRNIGLLAGIPKTAGGQTVNRLCGSSMQALHTAAAQIMTGQGDVFIIGGVEHMGHVGMMHGIDLNPEASKHYAKASNMM 151          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: FADA_IDILO (3-ketoacyl-CoA thiolase OS=Idiomarina loihiensis GN=fadA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 46/124 (37.10%), Postives = 62/124 (50.00%), Query Frame = 1
Query:  253 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKT-NVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPM 621
            D+VIV   RT + +SK G F+ T  +DL A ++K ++E+   VDP E+ DI  G V     Q  +  R +A  AG P  V   TVNR C S +Q           G  DI +  G+E M   PM
Sbjct:    3 DIVIVDCIRTPMGRSKNGVFRHTRAEDLSAALMKGLLERNPEVDPEELEDIYWGCVQQTLEQGFNIARNSALIAGIPHKVAGVTVNRLCGSSMQALHDATRAIMNGDGDIFMAGGVEHMGHVPM 126          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: FADA_AERS4 (3-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (strain A449) GN=fadA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 46/125 (36.80%), Postives = 65/125 (52.00%), Query Frame = 1
Query:  253 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKT-NVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMA 624
            DVVIV   RT + +SK G F++   +DL A ++ +++ +  N+DP+E+ DI  G V     Q  +  R AA  AG P+ V   TVNR C S +Q           G  DI I  G+E M   PM+
Sbjct:    3 DVVIVDCIRTPMGRSKGGAFRNVRAEDLSAHLMSSILLRNPNLDPNEIEDIYWGCVQQTLEQGFNIARNAALLAGIPKQVGAVTVNRLCGSSMQALHDASRAIQVGDGDIFIIGGVEHMGHVPMS 127          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: THLA_CLOAB (Acetyl-CoA acetyltransferase OS=Clostridium acetobutylicum GN=thlA PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 41/122 (33.61%), Postives = 64/122 (52.46%), Query Frame = 1
Query:  253 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNP 618
            +VVI +A RTA+  S     KD    DL A  +K  ++K  + P +V ++++G VL  G  + +  R A+F AG P  +P  T+N+ C SGL+           G  D+ I  G+E+M+  P
Sbjct:    3 EVVIASAVRTAI-GSYGKSLKDVPAVDLGATAIKEAVKKAGIKPEDVNEVILGNVLQAGLGQ-NPARQASFKAGLPVEIPAMTINKVCGSGLRTVSLAAQIIKAGDADVIIAGGMENMSRAP 122          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: FADA_SACD2 (3-ketoacyl-CoA thiolase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=fadA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 39/119 (32.77%), Postives = 62/119 (52.10%), Query Frame = 1
Query:  253 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTN-VDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESM 606
            DVVIV   RT + +SK G +++   DDL A ++  ++ +   +DP+++ D++ G V+  G Q  +  R     AG P TVP +TVNR C S +            G  D+ +  G+E M
Sbjct:    7 DVVIVDYARTPMGRSKNGCYRNVRADDLSADLITGLLARNAALDPAQIDDMIWGCVMQRGEQGFNVARNILLRAGLPHTVPAQTVNRLCGSSMSALHTAAANIMAGLGDVYLVGGVEHM 125          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: FADA_ACIBT (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=fadA PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 49/144 (34.03%), Postives = 71/144 (49.31%), Query Frame = 1
Query:  253 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKV-KAFEQAQNCL 681
            DVVIV   R+A+ KSK G F++   D L A +++A+I +   D +EV D++ G V     Q  +  R     AG P+TV  +TVNR C S +Q              DI I  G+E M    M     +NP+  K + +A N +
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALIARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHMGHVGMMHGIDLNPEASKHYAKASNMM 151          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: FADA_VIBF1 (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadA PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 43/124 (34.68%), Postives = 66/124 (53.23%), Query Frame = 1
Query:  253 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKT-NVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPM 621
            +VVIV   RT + +SK G F+ T  +DL A ++K ++++  +VDP+++ DI  G V     Q  +  R +A  AG P+++   TVNR C S +Q           G  +I I  G+E M   PM
Sbjct:    3 NVVIVDCIRTPMGRSKNGVFRHTRAEDLSAHLMKGLLKRNPSVDPNDIEDIYWGCVQQTLEQGFNIARNSALLAGLPQSIAATTVNRLCGSSMQALHDASRAIMVGDAEICIIGGVEHMGHVPM 126          
The following BLAST results are available for this feature:
BLAST of CX297729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
ATOB_PSEAE4.292e-1234.38Acetyl-CoA acetyltransferase OS=Pseudomonas aerugi... [more]
THIL_THIVI7.321e-1235.61Acetyl-CoA acetyltransferase OS=Thiocystis violace... [more]
FADA_PSYCK7.321e-1231.943-ketoacyl-CoA thiolase OS=Psychrobacter cryohalol... [more]
FADA_PSYA27.321e-1232.643-ketoacyl-CoA thiolase OS=Psychrobacter arcticus ... [more]
FADA_IDILO1.249e-1137.103-ketoacyl-CoA thiolase OS=Idiomarina loihiensis G... [more]
FADA_AERS41.249e-1136.803-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (... [more]
THLA_CLOAB1.631e-1133.61Acetyl-CoA acetyltransferase OS=Clostridium acetob... [more]
FADA_SACD21.631e-1132.773-ketoacyl-CoA thiolase OS=Saccharophagus degradan... [more]
FADA_ACIBT2.782e-1134.033-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_VIBF13.633e-1134.683-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]

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Properties
Property NameValue
Genbank descriptionC06004F04SK RindPdig24 Citrus clementina cDNA clone C06004F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297729 ID=CX297729; Name=CX297729; organism=Citrus clementina; type=EST; length=686bp
CCAAGGGAAAAAAAACATTCAAAGCTAAACGCTAAAAGGATCAAAAAGGA
AAAAAAAAAAAAGAAAAAAAGGATCCAATATTTTCGAATCAAACGAGAAA
TAATGGAGAAAGCAATCAACAGACAGCAAGTGTTGCTCGAACATCTTCGC
CCTTCTAATTCCTCCTCTCACAATTACGAGTCTATTCTCTCCGCGTCGGC
ATGTGCAGCTGGAGATAGCGCGGCGTATCATAGGACGTCTGTGTACGGTG
ATGATGTGGTGATTGTGGCAGCTTATAGGACTGCACTTTGCAAATCAAAA
CGAGGTGGTTTCAAGGACACTTATCCTGATGATCTGCTTGCACCTGTTTT
GAAGGCAGTGATAGAAAAAACAAATGTAGATCCAAGTGAAGTTGGAGACA
TTGTTGTGGGTACAGTTTTGGCACCAGGGTCTCAAAGAGCAAGTGAATGC
AGGATGGCTGCATTCTATGCTGGTTTCCCTGAAACTGTGCCTGTTAGAAC
TGTGAACAGGCAGTGCTCTTCTGGGCTTCAGGCTGTTGCTGATGTTGCTG
CTGCTATTAAAGCTGGCTTTTATGACATTGGTATTGGTGCTGGGCTGGAA
TCCATGACAGTCAATCCAATGGCTTGGGAAGGATCAGTAAATCCAAAAGT
AAAAGCCTTTGAACAAGCCCAGAATTGCCTCCTTCC
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