CX297729

Overview
NameCX297729
Unique NameCX297729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: FADA_ACIBY (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain AYE) GN=fadA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 48/144 (33.33%), Postives = 71/144 (49.31%), Query Frame = 1
Query:  253 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKV-KAFEQAQNCL 681
            DVVIV   R+A+ KSK G F++   D L A +++A++ +   D +EV D++ G V     Q  +  R     AG P+TV  +TVNR C S +Q              DI I  G+E M    M     +NP+  K + +A N +
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHMGHVGMMHGIDLNPEASKHYAKASNMM 151          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: FADA_ACIBS (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain SDF) GN=fadA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 48/144 (33.33%), Postives = 71/144 (49.31%), Query Frame = 1
Query:  253 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKV-KAFEQAQNCL 681
            DVVIV   R+A+ KSK G F++   D L A +++A++ +   D +EV D++ G V     Q  +  R     AG P+TV  +TVNR C S +Q              DI I  G+E M    M     +NP+  K + +A N +
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHMGHVGMMHGIDLNPEASKHYAKASNMM 151          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: FADA_ACIBC (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain ACICU) GN=fadA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 48/144 (33.33%), Postives = 71/144 (49.31%), Query Frame = 1
Query:  253 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKV-KAFEQAQNCL 681
            DVVIV   R+A+ KSK G F++   D L A +++A++ +   D +EV D++ G V     Q  +  R     AG P+TV  +TVNR C S +Q              DI I  G+E M    M     +NP+  K + +A N +
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHMGHVGMMHGIDLNPEASKHYAKASNMM 151          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: FADA_ACIB5 (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain AB0057) GN=fadA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 48/144 (33.33%), Postives = 71/144 (49.31%), Query Frame = 1
Query:  253 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKV-KAFEQAQNCL 681
            DVVIV   R+A+ KSK G F++   D L A +++A++ +   D +EV D++ G V     Q  +  R     AG P+TV  +TVNR C S +Q              DI I  G+E M    M     +NP+  K + +A N +
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHMGHVGMMHGIDLNPEASKHYAKASNMM 151          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: FADA_ACIB3 (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain AB307-0294) GN=fadA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 48/144 (33.33%), Postives = 71/144 (49.31%), Query Frame = 1
Query:  253 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKV-KAFEQAQNCL 681
            DVVIV   R+A+ KSK G F++   D L A +++A++ +   D +EV D++ G V     Q  +  R     AG P+TV  +TVNR C S +Q              DI I  G+E M    M     +NP+  K + +A N +
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHMGHVGMMHGIDLNPEASKHYAKASNMM 151          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: FADA_PSYWF (3-ketoacyl-CoA thiolase OS=Psychrobacter sp. (strain PRwf-1) GN=fadA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 47/150 (31.33%), Postives = 74/150 (49.33%), Query Frame = 1
Query:  235 TSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPKV-KAFEQAQNCL 681
            T++   DVVIV   RTA+ KSK G F++   D + A +++A++++ + D +EV DI+ G V     Q  +  R     A  P+T   +TVNR C S +Q              D+ I  G+E M    M     +NP+  K + +A N +
Sbjct:    2 TTLSPKDVVIVDGVRTAMGKSKNGMFRNVRADSMSAELVRALVKRNDFDTNEVEDIIWGCVNQTLEQGMNIGRNIGLLADIPKTAGGQTVNRLCGSSMQALHTAAAQIMTNQGDVFIIGGVEHMGHVGMMHGIDINPEASKHYAKASNMM 151          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: FADA_VIBFM (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain MJ11) GN=fadA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 43/124 (34.68%), Postives = 66/124 (53.23%), Query Frame = 1
Query:  253 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKT-NVDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPM 621
            +VVIV   RT + +SK G F+ T  +DL A ++K ++++  +VDP+++ DI  G V     Q  +  R +A  AG P+++   TVNR C S +Q           G  +I I  G+E M   PM
Sbjct:    3 NVVIVDCIRTPMGRSKNGVFRYTRAEDLSAHLMKGLLKRNPSVDPNDIEDIYWGCVQQTLEQGFNIARNSALLAGLPQSIAATTVNRLCGSSMQALHDASRAIMVGDAEICIIGGVEHMGHVPM 126          
BLAST of CX297729 vs. ExPASy Swiss-Prot
Match: FADA_PSEHT (3-ketoacyl-CoA thiolase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=fadA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 45/130 (34.62%), Postives = 63/130 (48.46%), Query Frame = 1
Query:  259 VIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTN-VDPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNP 645
            VIV   RT + +SK G FK+   +DL A ++K ++++   VDP+ + DI  G V     Q  +  R AA  AG P +VP  TVNR C S +Q           G  D  +  G+E M   PM      +P
Sbjct:    5 VIVDCIRTPMGRSKGGVFKNKRAEDLSAHLMKGLLDRNPAVDPASIDDIYWGCVQQTLEQGFNVARNAALLAGIPHSVPAVTVNRLCGSSMQALHDAARAIMTGAGDTYLIGGVEHMGHVPMTHGNDFHP 134          
The following BLAST results are available for this feature:
BLAST of CX297729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
FADA_ACIBY3.633e-1133.333-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_ACIBS3.633e-1133.333-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_ACIBC3.633e-1133.333-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_ACIB53.633e-1133.333-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_ACIB33.633e-1133.333-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_PSYWF4.745e-1131.333-ketoacyl-CoA thiolase OS=Psychrobacter sp. (stra... [more]
FADA_VIBFM6.198e-1134.683-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADA_PSEHT6.198e-1134.623-ketoacyl-CoA thiolase OS=Pseudoalteromonas halop... [more]

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Properties
Property NameValue
Genbank descriptionC06004F04SK RindPdig24 Citrus clementina cDNA clone C06004F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297729 ID=CX297729; Name=CX297729; organism=Citrus clementina; type=EST; length=686bp
CCAAGGGAAAAAAAACATTCAAAGCTAAACGCTAAAAGGATCAAAAAGGA
AAAAAAAAAAAAGAAAAAAAGGATCCAATATTTTCGAATCAAACGAGAAA
TAATGGAGAAAGCAATCAACAGACAGCAAGTGTTGCTCGAACATCTTCGC
CCTTCTAATTCCTCCTCTCACAATTACGAGTCTATTCTCTCCGCGTCGGC
ATGTGCAGCTGGAGATAGCGCGGCGTATCATAGGACGTCTGTGTACGGTG
ATGATGTGGTGATTGTGGCAGCTTATAGGACTGCACTTTGCAAATCAAAA
CGAGGTGGTTTCAAGGACACTTATCCTGATGATCTGCTTGCACCTGTTTT
GAAGGCAGTGATAGAAAAAACAAATGTAGATCCAAGTGAAGTTGGAGACA
TTGTTGTGGGTACAGTTTTGGCACCAGGGTCTCAAAGAGCAAGTGAATGC
AGGATGGCTGCATTCTATGCTGGTTTCCCTGAAACTGTGCCTGTTAGAAC
TGTGAACAGGCAGTGCTCTTCTGGGCTTCAGGCTGTTGCTGATGTTGCTG
CTGCTATTAAAGCTGGCTTTTATGACATTGGTATTGGTGCTGGGCTGGAA
TCCATGACAGTCAATCCAATGGCTTGGGAAGGATCAGTAAATCCAAAAGT
AAAAGCCTTTGAACAAGCCCAGAATTGCCTCCTTCC
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