CX297736

Overview
NameCX297736
Unique NameCX297736
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297736 vs. ExPASy Swiss-Prot
Match: YAY4_SCHPO (UPF0103 protein C4H3.04c OS=Schizosaccharomyces pombe GN=SPAC4H3.04c PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.605e-39
Identity = 89/226 (39.38%), Postives = 133/226 (58.85%), Query Frame = 3
Query:   27 IDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKAT-GKFELMDICVDEAEHSMEMHLPYLA--KVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNY--------------MHYDKKHG----VIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHMLGNCSTKIKIKFLRY 635
            +D + I RVF+ GPSHH +T KC +S A++  TP+GDL +D ++ ++L A+   F+ M + VDE+EHS+EM  P LA   + +G L  +KIVPI++GA+ +       +  ++Y+ D SN F +SSDFCHWG RF Y              + Y ++ G     I++SI  LD +GM IIET   D F +YL    NTICGR+PI + +  +   +   + KF+ Y
Sbjct:   63 LDFSKIQRVFVFGPSHHIFTRKCLVSRASICSTPLGDLKVDEDLCQKLVASDNSFDSMTLDVDESEHSLEMQFPLLAFHLLKQGCLGKVKIVPIMIGALTSTTMMAAAKFLSQYIKDESNSFVISSDFCHWGRRFGYTLYLNDTNQLEDAVLKYKRRGGPTSPKIYESISNLDHIGMKIIETKSSDDFSEYLKTTQNTICGRYPIELIMKSMECANFSERFKFISY 288          
BLAST of CX297736 vs. ExPASy Swiss-Prot
Match: YJX8_YEAST (UPF0103 protein YJR008W OS=Saccharomyces cerevisiae GN=YJR008W PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.796e-26
Identity = 78/228 (34.21%), Postives = 116/228 (50.88%), Query Frame = 3
Query:   39 SISRVFLLGPSHH-YYTPKCALSTATVYKTPIGDLPLDLEVIE-----ELKATGK--FELMDICVDEAEHSMEMHLPYLAKVFEGH-----LIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYD-------------------------KKHGV-IHKSIEALDKMGMDIIE---TGDP-DAFKKYLLEYDNTICGRHPISVFLHML 593
            ++ R+F+LGPSHH Y+  +  +S  +  +TP+G+L +D ++ +     E    GK  F+ MD   D AEHS+EM LP L +  +        +K+ P++V   + + +   G + ++Y+ DP+N F VSSDFCHWG RF Y  Y                            H V I +SIE +D+  M  +     G+  DA+K+YL    NTICG  PISV L  L
Sbjct:   69 NVKRIFILGPSHHIYFKNQILVSAFSELETPLGNLKVDTDLCKTLIQKEYPENGKKLFKPMDHDTDMAEHSLEMQLPMLVETLKWREISLDTVKVFPMMVSHNSVDVDRCIGNILSEYIKDPNNLFIVSSDFCHWGRRFQYTGYVGSKEELNDAIQEETEVEMLTARSKLSHHQVPIWQSIEIMDRYAMKTLSDTPNGERYDAWKQYLEITGNTICGEKPISVILSAL 296          
BLAST of CX297736 vs. ExPASy Swiss-Prot
Match: Y992_IGNH4 (UPF0103 protein Igni_0992 OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=Igni_0992 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.252e-11
Identity = 47/180 (26.11%), Postives = 87/180 (48.33%), Query Frame = 3
Query:   51 VFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHM 590
            V ++GP+H    P  ++   ++++TP+G +  D E I EL         D      EHS+E+ LP+L  +F G   +IVPI++         +  +   + +++    + V S      S  N  HY+     + K + AL+K     I   DP+  ++ L++YD ++CG  P+ V +++
Sbjct:   81 VVIIGPNHTGLGPAVSVMPPSIWETPLGGVKTDDEAISELLKVSNVVEEDYSAHAYEHSLEVQLPFLQYLF-GDSFRIVPIVMKVQTPSVARLLMQSIKEAMENLGRDYVVLS-----SSDLN--HYEPHDITVEKDMLALEK-----IVNLDPEGLQEVLVKYDISMCGPGPVMVNMYL 247          
The following BLAST results are available for this feature:
BLAST of CX297736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
YAY4_SCHPO3.605e-3939.38UPF0103 protein C4H3.04c OS=Schizosaccharomyces po... [more]
YJX8_YEAST7.796e-2634.21UPF0103 protein YJR008W OS=Saccharomyces cerevisia... [more]
Y992_IGNH49.252e-1126.11UPF0103 protein Igni_0992 OS=Ignicoccus hospitalis... [more]

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Properties
Property NameValue
Genbank descriptionC06004F11SK RindPdig24 Citrus clementina cDNA clone C06004F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297736 ID=CX297736; Name=CX297736; organism=Citrus clementina; type=EST; length=741bp
GAGGCTGCTGCCTACGCATTTGGAACATAGACCCAACTAGCATTTCTCGG
GTATTCCTTCTTGGTCCATCTCACCATTATTACACTCCTAAGTGTGCTCT
TTCGACAGCAACAGTTTACAAGACTCCCATAGGGGATCTACCTCTTGATT
TGGAAGTCATCGAGGAGCTAAAAGCTACAGGAAAATTTGAATTGATGGAT
ATTTGCGTAGATGAGGCTGAACATAGCATGGAAATGCACTTGCCATACCT
TGCAAAAGTATTTGAGGGGCACCTGATAAAAATTGTGCCCATTCTTGTCG
GTGCTGTCAATGCTGAAAATGAAGCAATGTATGGAAGGTTGTTTGCCAAA
TATGTAGATGATCCCAGCAATTTCTTCTCCGTGTCCTCAGATTTTTGTCA
CTGGGGTTCTCGGTTCAATTACATGCACTATGACAAGAAACATGGAGTCA
TTCACAAATCTATTGAAGCCTTGGACAAAATGGGCATGGATATAATAGAA
ACTGGAGATCCTGACGCATTCAAAAAGTATTTATTGGAGTATGACAACAC
AATTTGTGGTCGGCATCCAATTAGTGTTTTTCTCCATATGTTGGGGAACT
GCTCCACAAAGATAAAAATCAAATTTCTTCGATATGAACNAATCAGCCAA
TGCAAAACGAAGAGAGATAGTAGTGTAAGTTATGCATCTGCAGCAGCTAA
GGTGGATGCTTGAAGCTGTGAGAAATATTATGTTGGATTTA
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