CX297742

Overview
NameCX297742
Unique NameCX297742
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPWA_PSEWI (Glutathione peroxidase OS=Pseudomonas wisconsinensis GN=gpwA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.013e-14
Identity = 43/135 (31.85%), Postives = 70/135 (51.85%), Query Frame = -2 
Query:  217 GKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSP 621
            G+++ L ++ GK L++VN AS CG TP  +  L  LY++YK Q  E+L  P + F  QE   + E        +   F + +   V+G N  P+++ L   +        +WNF K++VD+ GKV+  +   T P
Sbjct:   39 GENIELCQYAGKPLVVVNTASFCGFTP-QFKGLEALYQRYKDQELEVLGVPSDDF-RQESADSKETATVCYVNYGVTFAMTEPQPVSGANAIPLFKGLAEQS-----RQPRWNFFKYVVDRQGKVVASFSSLTKP 166
The following BLAST results are available for this feature:
BLAST of CX297742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPWA_PSEWI4.013e-1431.85Glutathione peroxidase OS=Pseudomonas wisconsinens... [more]

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Properties
Property NameValue
Genbank descriptionC06004G05SK RindPdig24 Citrus clementina cDNA clone C06004G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297742 ID=CX297742; Name=CX297742; organism=Citrus clementina; type=EST; length=739bp
GAGGTTTTTTAGTCAAATCTTTAAATATTAGGATATAAAAAACCTATAAC
ATTTCAGGGGAGGCAGGGAAAAATTCATCTATGTGATGCCCGATTCAGAA
ATATACATATACATATATTCAGTTTCTATCTCGTCGATACATCTGAGACA
TGGCCAAGCAGCTCAAGTCAAGATTCATGCCACAACAAGCTTCTGGATGT
CCTTCTCAATTTGGAAAGGCGAGGTAGTTGGTGGATATCTCTCGATGACT
TTACCATTTTTGTCCACTAAGAACTTCTCAAAGTTCCACTTGACAAGGTC
GCCTAAAAATCCCCCAGCACTTGACTTCAAAAACTGGTAAACTGGAGCTG
TGTTTGGTCCATTTACATCAACCTTGTCAAATATGGGAAATTCTGCCTTA
AACCTAGTACAAGCGAATTCCTTGATCTCAGGGTTTGATCCAGGCTCTTG
CCCACCAAATTGATTGCAAGGGAAAGCTAGAATCTCAAATCCTTGAGTCT
TGTACTTCTCATATAAGTGAGAGAGCTCCGAGTAATTAGATGGTGTCAAG
CCACATCTTGAAGCGACATTCACAATCAACAGAACTTTGCCCTTAAACTT
GCTAAGAGGAACATCTTTACCATCAATATCCTTGACGGTGAAGTCATATA
AAGACTTCTCAGTAGCAGCTGTAGCGTGAACACCAAAGGAACGACGTTTC
ACGAAAACCCAGGCAAATTTGAAAGATGGGAAACAGCCC
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