CX297742

Overview
NameCX297742
Unique NameCX297742
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPXA_NEIMF (Glutathione peroxidase homolog OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=gpxA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.879e-38
Identity = 84/177 (47.46%), Postives = 112/177 (63.28%), Query Frame = -2
Query:  184 LYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKS----SAGGFL-----------------GDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 651
            +YDF +KD +G  V LS ++GKVLLIVN A+RCGLTP  Y  L  LY +Y  +G EIL FPCNQF  Q P S+ EI +    +F  +F IFDK++VNG NTAP+Y +LKS      G  L                 GD +KWNF KFLV+++G+V+ER+ P+ +P +IE DI+ L+
Sbjct:    3 IYDFQMKDAEGNAVDLSGYRGKVLLIVNTATRCGLTPQ-YEALQKLYAQYTAEGLEILDFPCNQFREQAPESSGEIAQVCMMKFGTKFKIFDKIEVNGANTAPLYAYLKSVKPQDKGNHLFKDFVLKLAALGEKRDEGD-IKWNFTKFLVNRDGEVVERFAPSVTPEEIEADIRALL 177          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPXA_NEIMC (Glutathione peroxidase homolog OS=Neisseria meningitidis serogroup C GN=gpxA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.879e-38
Identity = 84/177 (47.46%), Postives = 112/177 (63.28%), Query Frame = -2
Query:  184 LYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKS----SAGGFL-----------------GDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 651
            +YDF +KD +G  V LS ++GKVLLIVN A+RCGLTP  Y  L  LY +Y  +G EIL FPCNQF  Q P S+ EI +    +F  +F IFDK++VNG NTAP+Y +LKS      G  L                 GD +KWNF KFLV+++G+V+ER+ P+ +P +IE DI+ L+
Sbjct:    3 IYDFQMKDAEGNAVDLSGYRGKVLLIVNTATRCGLTPQ-YEALQKLYAQYTAEGLEILDFPCNQFREQAPESSGEIAQVCMMKFGTKFKIFDKIEVNGANTAPLYAYLKSVKPQDKGNHLFKDFVLKLAALGEKRDEGD-IKWNFTKFLVNRDGEVVERFAPSVTPEEIEADIRALL 177          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPXA_NEIMB (Glutathione peroxidase homolog OS=Neisseria meningitidis serogroup B GN=gpxA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.879e-38
Identity = 84/177 (47.46%), Postives = 112/177 (63.28%), Query Frame = -2
Query:  184 LYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKS----SAGGFL-----------------GDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 651
            +YDF +KD +G  V LS ++GKVLLIVN A+RCGLTP  Y  L  LY +Y  +G EIL FPCNQF  Q P S+ EI +    +F  +F IFDK++VNG NTAP+Y +LKS      G  L                 GD +KWNF KFLV+++G+V+ER+ P+ +P +IE DI+ L+
Sbjct:    3 IYDFQMKDAEGNAVDLSGYRGKVLLIVNTATRCGLTPQ-YEALQKLYAQYTAEGLEILDFPCNQFREQAPESSGEIAQVCMMKFGTKFKIFDKIEVNGANTAPLYAYLKSVKPQDKGNHLFKDFVLKLAALGEKRDEGD-IKWNFTKFLVNRDGEVVERFAPSVTPEEIEADIRALL 177          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPXA_NEIMA (Glutathione peroxidase homolog OS=Neisseria meningitidis serogroup A GN=gpxA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.879e-38
Identity = 84/177 (47.46%), Postives = 112/177 (63.28%), Query Frame = -2
Query:  184 LYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKS----SAGGFL-----------------GDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 651
            +YDF +KD +G  V LS ++GKVLLIVN A+RCGLTP  Y  L  LY +Y  +G EIL FPCNQF  Q P S+ EI +    +F  +F IFDK++VNG NTAP+Y +LKS      G  L                 GD +KWNF KFLV+++G+V+ER+ P+ +P +IE DI+ L+
Sbjct:    3 IYDFQMKDAEGNAVDLSGYRGKVLLIVNTATRCGLTPQ-YEALQKLYAQYTAEGLEILDFPCNQFREQAPESSGEIAQVCMMKFGTKFKIFDKIEVNGANTAPLYAYLKSVKPQDKGNHLFKDFVLKLAALGEKRDEGD-IKWNFTKFLVNRDGEVVERFAPSVTPEEIEADIRALL 177          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX4_MACFU (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Macaca fuscata fuscata GN=GPX4 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.514e-37
Identity = 76/156 (48.72%), Postives = 107/156 (68.59%), Query Frame = -2
Query:  196 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 657
            +S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN +IKEFA   +  +F +F K+ VNG +  P+++++K      G LG+ +KWNF KFL+DKNG V++RY P   P  IEKD+
Sbjct:   39 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGVRILAFPCNQFGKQEPGSNEKIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX4_CEBAP (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Cebus apella GN=GPX4 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.514e-37
Identity = 77/155 (49.68%), Postives = 106/155 (68.39%), Query Frame = -2
Query:  196 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 654
            S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA   +  +F +F K+ VNG +  P+++++K      G LG+ +KWNF KFL+DKNG V++RY P   P  IEKD+
Sbjct:   40 SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDL 193          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX4_PIG (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Sus scrofa GN=GPX4 PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 2.583e-37
Identity = 76/156 (48.72%), Postives = 107/156 (68.59%), Query Frame = -2
Query:  196 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 657
            +S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGS+ EIKEFA   +  +F +F K+ VNG +  P+++++K      G LG+ +KWNF KFL+DKNG V++RY P   P  IEKD+
Sbjct:   39 RSMHEFSAKDIDGHMVNLDKYRGYVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSDAEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDL 193          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX41_MOUSE (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Mus musculus GN=Gpx4 PE=1 SV=4)

HSP 1 Score: 155.606 bits (392), Expect = 2.583e-37
Identity = 76/156 (48.72%), Postives = 107/156 (68.59%), Query Frame = -2
Query:  196 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 657
            +S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA   +  +F ++ K+ VNG +  P+++++K      G LG+ +KWNF KFL+DKNG V++RY P   P  IEKD+
Sbjct:   39 RSMHEFSAKDIDGHMVCLDKYRGFVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEFA-AGYNVKFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDL 193          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX42_RAT (Phospholipid hydroperoxide glutathione peroxidase, nuclear OS=Rattus norvegicus GN=Gpx4 PE=2 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 4.406e-37
Identity = 76/156 (48.72%), Postives = 105/156 (67.31%), Query Frame = -2
Query:  196 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 657
            +S+++F  KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA   +   F ++ K+ VNG +  P+++++K      G LG+ +KWNF KFL+DKNG V++RY P   P  IEKD+
Sbjct:   95 RSMHEFAAKDIDGHMVCLDKYRGCVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEFA-AGYNVRFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDL 249          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX41_RAT (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Rattus norvegicus GN=Gpx4 PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 4.406e-37
Identity = 76/156 (48.72%), Postives = 105/156 (67.31%), Query Frame = -2
Query:  196 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 657
            +S+++F  KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA   +   F ++ K+ VNG +  P+++++K      G LG+ +KWNF KFL+DKNG V++RY P   P  IEKD+
Sbjct:   39 RSMHEFAAKDIDGHMVCLDKYRGCVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEFA-AGYNVRFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDL 193          
The following BLAST results are available for this feature:
BLAST of CX297742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPXA_NEIMF8.879e-3847.46Glutathione peroxidase homolog OS=Neisseria mening... [more]
GPXA_NEIMC8.879e-3847.46Glutathione peroxidase homolog OS=Neisseria mening... [more]
GPXA_NEIMB8.879e-3847.46Glutathione peroxidase homolog OS=Neisseria mening... [more]
GPXA_NEIMA8.879e-3847.46Glutathione peroxidase homolog OS=Neisseria mening... [more]
GPX4_MACFU1.514e-3748.72Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_CEBAP1.514e-3749.68Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_PIG2.583e-3748.72Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX41_MOUSE2.583e-3748.72Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX42_RAT4.406e-3748.72Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX41_RAT4.406e-3748.72Phospholipid hydroperoxide glutathione peroxidase,... [more]

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Properties
Property NameValue
Genbank descriptionC06004G05SK RindPdig24 Citrus clementina cDNA clone C06004G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297742 ID=CX297742; Name=CX297742; organism=Citrus clementina; type=EST; length=739bp
GAGGTTTTTTAGTCAAATCTTTAAATATTAGGATATAAAAAACCTATAAC
ATTTCAGGGGAGGCAGGGAAAAATTCATCTATGTGATGCCCGATTCAGAA
ATATACATATACATATATTCAGTTTCTATCTCGTCGATACATCTGAGACA
TGGCCAAGCAGCTCAAGTCAAGATTCATGCCACAACAAGCTTCTGGATGT
CCTTCTCAATTTGGAAAGGCGAGGTAGTTGGTGGATATCTCTCGATGACT
TTACCATTTTTGTCCACTAAGAACTTCTCAAAGTTCCACTTGACAAGGTC
GCCTAAAAATCCCCCAGCACTTGACTTCAAAAACTGGTAAACTGGAGCTG
TGTTTGGTCCATTTACATCAACCTTGTCAAATATGGGAAATTCTGCCTTA
AACCTAGTACAAGCGAATTCCTTGATCTCAGGGTTTGATCCAGGCTCTTG
CCCACCAAATTGATTGCAAGGGAAAGCTAGAATCTCAAATCCTTGAGTCT
TGTACTTCTCATATAAGTGAGAGAGCTCCGAGTAATTAGATGGTGTCAAG
CCACATCTTGAAGCGACATTCACAATCAACAGAACTTTGCCCTTAAACTT
GCTAAGAGGAACATCTTTACCATCAATATCCTTGACGGTGAAGTCATATA
AAGACTTCTCAGTAGCAGCTGTAGCGTGAACACCAAAGGAACGACGTTTC
ACGAAAACCCAGGCAAATTTGAAAGATGGGAAACAGCCC
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