CX297742

Overview
NameCX297742
Unique NameCX297742
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1062 contig Ccv1_Contig1062:258..996. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX8_BOVIN (Probable glutathione peroxidase 8 OS=Bos taurus GN=GPX8 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.378e-28
Identity = 66/157 (42.04%), Postives = 90/157 (57.32%), Query Frame = -2
Query:  184 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 654
            S Y F VKD +G+ V L KFKGKV L+VNVAS C LT  NY  L  L++++    F +LAFPCNQFG  EP  + E+  FA   F   FPIF K+ + G    P ++FL  S+        +WNF K+LV+  G+V++ + P      I  +I  L+
Sbjct:   46 SFYTFEVKDANGRVVSLEKFKGKVALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVVSFARNNFGVTFPIFHKIKILGSEAEPAFRFLVDSS----KKEPRWNFWKYLVNPEGQVVKTWRPEEPIEVIRPEIAALI 198          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX8_HUMAN (Probable glutathione peroxidase 8 OS=Homo sapiens GN=GPX8 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.088e-27
Identity = 66/157 (42.04%), Postives = 90/157 (57.32%), Query Frame = -2
Query:  184 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 654
            S Y F VKD  G+ V L K+KGKV L+VNVAS C LT  NY  L  L++++    F +LAFPCNQFG  EP  + E++ FA   +   FPIF K+ + G    P ++FL  S+        +WNF K+LV+  G+V++ + P      I  DI  LV
Sbjct:   46 SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSS----KKEPRWNFWKYLVNPEGQVVKFWKPEEPIEVIRPDIAALV 198          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX8_MOUSE (Probable glutathione peroxidase 8 OS=Mus musculus GN=Gpx8 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.421e-27
Identity = 61/157 (38.85%), Postives = 90/157 (57.32%), Query Frame = -2
Query:  184 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 654
            S Y F VKD  G+ V L KFKGK  L+VNVAS C  T  +Y  L  L++++    F +LAFPCNQFG  EP S+ E++ FA   +   FPIF K+ + GP   P ++F+  S+        +WNF K+LV+  G+V++ + P      I   + +++
Sbjct:   46 SFYSFEVKDAKGRTVSLEKFKGKASLVVNVASDCRFTDKSYQTLRELHKEFGPYHFNVLAFPCNQFGESEPKSSKEVESFARQNYGVTFPIFHKIKILGPEAEPAFRFIVDSS----KKEPRWNFWKYLVNPEGQVVKFWRPEEPLEAIRPHVSQMI 198          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX8_DANRE (Probable glutathione peroxidase 8 OS=Danio rerio GN=gpx8 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.051e-27
Identity = 62/158 (39.24%), Postives = 90/158 (56.96%), Query Frame = -2
Query:  184 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 657
            K  Y + VKD  G+ V L K++GKV L+VNVAS   LT  +Y  L  L+ +  T  F +LAFPC+Q+G  E G++ EI+ FA + +   FPIF+K+ + G    P ++FL  S    +  + +WNF KFLV   G+V+  + P      I K+   LV
Sbjct:   46 KDFYSYEVKDARGRTVSLEKYRGKVSLVVNVASGSELTEQSYRALQELHRELGTSHFNVLAFPCSQYGDTESGTSREIEAFAKSNYGVTFPIFNKIKIMGSEAEPAFRFLTDS----VQKIPRWNFWKFLVSPEGQVVRFWKPEEPVSDIRKEATTLV 199          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX8A_XENLA (Probable glutathione peroxidase 8-A OS=Xenopus laevis GN=gpx8-A PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.209e-27
Identity = 61/155 (39.35%), Postives = 86/155 (55.48%), Query Frame = -2
Query:  184 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 648
            Y + V D  G+ V LSK++GK  L+VNVAS C    +NY  L  L+ ++    F +LAFPCNQFG  EPG+N EI   A   +   FP+F K+ + G    P Y+FL  S         +WNF K+LVD  G+V++ + P  +   I  ++  LV
Sbjct:   48 YSYEVTDAKGRAVALSKYRGKASLVVNVASGCPHAEANYRSLQELHREFGPSHFTVLAFPCNQFGESEPGTNQEIGALAKRNYGVTFPMFSKIKILGSEAEPAYRFLVDST----KKEPRWNFWKYLVDPQGQVVKYWRPDETAESIRPEVASLV 198          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX_ENCCU (Probable phospholipid hydroperoxide glutathione peroxidase OS=Encephalitozoon cuniculi GN=ECU02_0440 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.571e-26
Identity = 59/146 (40.41%), Postives = 87/146 (59.59%), Query Frame = -2
Query:  226 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAG--GFLGDLVKWNFEKFLVDKNGKVIERYPPT 657
            ++ Y  + +  DG +V L  F+G V++I NVAS C    SNY   + L +K+  +G  IL FPCNQ+ GQE     EI+     ++   F +FDKVDV G    PV++ L ++    G LG+ +KWNF KFLVD+ G V++R+ P+
Sbjct:    8 EAFYGLSARGWDGSEVSLGSFRGCVIMIANVASSCKFAESNYKSFAGLLDKFYRKGLRILLFPCNQYLGQESRPIEEIRGEVSKKYSDRFVVFDKVDVFGKGAHPVFRHLVNTKNGKGRLGNFIKWNFTKFLVDRKGCVVKRFGPS 153          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX3_CAEEL (Glutathione peroxidase OS=Caenorhabditis elegans GN=C11E4.2 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.620e-25
Identity = 62/169 (36.69%), Postives = 96/169 (56.80%), Query Frame = -2
Query:  226 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK--------AEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL---------------VKWNFEKFLVDKNGKVIERYPPT 663
            T +S++DF ++ + G+   LS+++GKV+L+VNVA+ C  T   Y++ + + EKY+ QG  ++AFPCNQF  QEP  N E+     T  +         E  I+ K+DVNG N  P+Y+F+K S    +  +               + WNFEKFL+D+NG+   R+ PT
Sbjct:   37 TNQSIFDFQIETLQGEYTDLSQYRGKVILLVNVATFCAYT-QQYTDFNPMLEKYQAQGLTLVAFPCNQFYLQEPAENHELMN-GLTYVRPGNGWTPHQELHIYGKIDVNGDNHHPLYEFVKESCPQTVDKIGKTDELMYNPVRPSDITWNFEKFLIDRNGQPRFRFHPT 203          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX8_TETNG (Probable glutathione peroxidase 8 OS=Tetraodon nigroviridis GN=gpx8 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.126e-24
Identity = 62/156 (39.74%), Postives = 88/156 (56.41%), Query Frame = -2
Query:  184 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQ-IEKDIQKLV 648
            Y F VKD  G+ V L K++GK  L+VNVASR   T SNY  L  L+ +     F +LAFPC QFG  E GS+ + + FA   +   FP F ++ + G    P ++FL  S    +  + +WNF KFLV+  GKV+ R+  T  P + I +++  LV
Sbjct:   49 YSFEVKDAKGRTVSLEKYRGKASLVVNVASRSEQTESNYRSLQELHRELGPSHFNVLAFPCAQFGETETGSSRDSEAFAKATYGVTFPFFSRIKIMGSEAEPAFRFLTDS----VQKVPRWNFWKFLVNPEGKVV-RFWRTDEPMESIRREVTALV 199          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX1_RAT (Glutathione peroxidase 1 OS=Rattus norvegicus GN=Gpx1 PE=1 SV=4)

HSP 1 Score: 104.375 bits (259), Expect = 6.830e-22
Identity = 64/188 (34.04%), Postives = 95/188 (50.53%), Query Frame = -2
Query:  184 TAATEKSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 672
            +A  + ++Y F+ + +  G+ V L   +GKVLLI NVAS  G T  +Y+E++ L ++   +G  +L FPCNQFG QE G N EI       R    F+  F +F+K +VNG    P++ FL+++      D                    + WNFEKFLV  +G  + RY        IE DI+ L+
Sbjct:    7 SAVAQSTVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTTRDYTEMNDLQKRLGPRGLVVLGFPCNQFGHQENGKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGEKAHPLFTFLRNALPAPSDDPTALMTDPKYIIWSPVCRNDISWNFEKFLVGPDGVPVRRYSRRFRTIDIEPDIEALL 194          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX1_MOUSE (Glutathione peroxidase 1 OS=Mus musculus GN=Gpx1 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.920e-22
Identity = 65/188 (34.57%), Postives = 96/188 (51.06%), Query Frame = -2
Query:  184 TAATEKSLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 672
            +AA + ++Y F+ + + G + V L   +GKVLLI NVAS  G T  +Y+E++ L ++   +G  +L FPCNQFG QE G N EI       R    F+  F +F+K +VNG    P++ FL+++      D                    + WNFEKFLV  +G  + RY        IE DI+ L+
Sbjct:    7 SAAAQSTVYAFSARPLTGGEPVSLGSLRGKVLLIENVASLUGTTIRDYTEMNDLQKRLGPRGLVVLGFPCNQFGHQENGKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGEKAHPLFTFLRNALPTPSDDPTALMTDPKYIIWSPVCRNDIAWNFEKFLVGPDGVPVRRYSRRFRTIDIEPDIETLL 194          
The following BLAST results are available for this feature:
BLAST of CX297742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX8_BOVIN6.378e-2842.04Probable glutathione peroxidase 8 OS=Bos taurus GN... [more]
GPX8_HUMAN1.088e-2742.04Probable glutathione peroxidase 8 OS=Homo sapiens ... [more]
GPX8_MOUSE1.421e-2738.85Probable glutathione peroxidase 8 OS=Mus musculus ... [more]
GPX8_DANRE7.051e-2739.24Probable glutathione peroxidase 8 OS=Danio rerio G... [more]
GPX8A_XENLA9.209e-2739.35Probable glutathione peroxidase 8-A OS=Xenopus lae... [more]
GPX_ENCCU1.571e-2640.41Probable phospholipid hydroperoxide glutathione pe... [more]
GPX3_CAEEL8.620e-2536.69Glutathione peroxidase OS=Caenorhabditis elegans G... [more]
GPX8_TETNG1.126e-2439.74Probable glutathione peroxidase 8 OS=Tetraodon nig... [more]
GPX1_RAT6.830e-2234.04Glutathione peroxidase 1 OS=Rattus norvegicus GN=G... [more]
GPX1_MOUSE8.920e-2234.57Glutathione peroxidase 1 OS=Mus musculus GN=Gpx1 P... [more]

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Properties
Property NameValue
Genbank descriptionC06004G05SK RindPdig24 Citrus clementina cDNA clone C06004G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297742 ID=CX297742; Name=CX297742; organism=Citrus clementina; type=EST; length=739bp
GAGGTTTTTTAGTCAAATCTTTAAATATTAGGATATAAAAAACCTATAAC
ATTTCAGGGGAGGCAGGGAAAAATTCATCTATGTGATGCCCGATTCAGAA
ATATACATATACATATATTCAGTTTCTATCTCGTCGATACATCTGAGACA
TGGCCAAGCAGCTCAAGTCAAGATTCATGCCACAACAAGCTTCTGGATGT
CCTTCTCAATTTGGAAAGGCGAGGTAGTTGGTGGATATCTCTCGATGACT
TTACCATTTTTGTCCACTAAGAACTTCTCAAAGTTCCACTTGACAAGGTC
GCCTAAAAATCCCCCAGCACTTGACTTCAAAAACTGGTAAACTGGAGCTG
TGTTTGGTCCATTTACATCAACCTTGTCAAATATGGGAAATTCTGCCTTA
AACCTAGTACAAGCGAATTCCTTGATCTCAGGGTTTGATCCAGGCTCTTG
CCCACCAAATTGATTGCAAGGGAAAGCTAGAATCTCAAATCCTTGAGTCT
TGTACTTCTCATATAAGTGAGAGAGCTCCGAGTAATTAGATGGTGTCAAG
CCACATCTTGAAGCGACATTCACAATCAACAGAACTTTGCCCTTAAACTT
GCTAAGAGGAACATCTTTACCATCAATATCCTTGACGGTGAAGTCATATA
AAGACTTCTCAGTAGCAGCTGTAGCGTGAACACCAAAGGAACGACGTTTC
ACGAAAACCCAGGCAAATTTGAAAGATGGGAAACAGCCC
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