CX297742

Overview
NameCX297742
Unique NameCX297742
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1062 contig Ccv1_Contig1062:258..996. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX2_RAT (Glutathione peroxidase 2 OS=Rattus norvegicus GN=Gpx2 PE=1 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 63/182 (34.62%), Postives = 88/182 (48.35%), Query Frame = -2
Query:  184 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 657
            KS YD +   +DG+ +  + F+G+ +LI NVAS  G T  +Y++L+ L  ++  +   +L FPCNQFG QE   N EI       R    F+  F +  K DVNG N  PV+ +LK        D                    V WNFEKFL+   G+   RY  T     IE DI++L+
Sbjct:    6 KSFYDLSAIGLDGEKIDFNTFRGRAVLIENVASLUGTTTRDYTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRHGGGFQPTFSLTQKCDVNGQNQHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRTFQTINIEPDIKRLL 186          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPXC_DIRIM (Glutathione peroxidase OS=Dirofilaria immitis PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.895e-20
Identity = 61/168 (36.31%), Postives = 88/168 (52.38%), Query Frame = -2
Query:  226 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE-------IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKS---SAGGFLGDL------------VKWNFEKFLVDKNGKVIERYPPT 663
            T +++YDF V  +DG +  L++++GKVLL+VNVA+ C  T   Y++ + + E       +ILAFPCNQF  QEP  N E       ++            IF KV+VNG +  P+Y+FLK         +GD             + WNFEKFL+DK G    R+ P+
Sbjct:   36 TSQTIYDFHVPTLDGSEKSLAEYRGKVLLLVNVATYCAYT-FQYNDFNPMLENNSNGTLKILAFPCNQFLLQEPAENHELLNGLKYVRPGNGWEPHGNMHIFGKVEVNGDDHHPLYKFLKEHCPQTVPIIGDRHQLMYNPIGTNDIIWNFEKFLIDKKGHPRYRFHPS 202          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX6_HUMAN (Glutathione peroxidase 6 OS=Homo sapiens GN=GPX6 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 64/176 (36.36%), Postives = 94/176 (53.41%), Query Frame = -2
Query:  253 FAWVFVKRRSFGVHATAATEKSLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI---KEFAC--TRFKAEFPIFDKVDVNGPNTAPVYQFLKSS---AGGFLGDL------------VKWNFEKFLVDKNG 717
            FA   +K ++  V        ++Y++    ++G++ +   +F GK +L VNVA+  GL  + Y EL+ L E+ K  G  +LAFPCNQFG QEPG+N EI    ++ C  + F   F +F+K DVNG     V+ FLK+S       LG              ++WNFEKFLV  +G
Sbjct:   18 FAQQTLKPQNRKVDCNKGVTGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLA-AQYPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDG 192          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX3_MOUSE (Glutathione peroxidase 3 OS=Mus musculus GN=Gpx3 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.349e-20
Identity = 67/174 (38.51%), Postives = 90/174 (51.72%), Query Frame = -2
Query:  196 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAG------GFLGDL---------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 654
            ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G  IL FP NQFG QEPG N EI       R    F   F +F+K DVNG      Y FLK+S        G  G L         ++WNFEKFLV  +G  + R+   T+   ++ DI
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYUGLT-DQYLELNALQEELGPFGLVILGFPSNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTAELLGSPGRLFWEPMKIHDIRWNFEKFLVGPDGIPVMRWYHRTTVSNVKMDI 211          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX5_HUMAN (Epididymal secretory glutathione peroxidase OS=Homo sapiens GN=GPX5 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.090e-19
Identity = 64/174 (36.78%), Postives = 89/174 (51.15%), Query Frame = -2
Query:  196 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSA---GGFLGDL------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 654
            ++YD+    ++  + V   ++ GK +L VNVA+ CGLT + Y EL+ L E+ K  G  +L FPCNQFG QEPG N EI       R    F   F +F+K DVNG     V+ FLK S       LG              ++WNFEKFLV  +G  + R+    +   ++ DI
Sbjct:   39 TIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLT-AQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDI 211          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX6_MOUSE (Glutathione peroxidase 6 OS=Mus musculus GN=Gpx6 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.424e-19
Identity = 66/176 (37.50%), Postives = 90/176 (51.14%), Query Frame = -2
Query:  190 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSS---AGGFLGDL------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK 654
            ++Y++    IDG   V   ++ GK +L VNVAS CGLT + Y EL+ L E+ K     +L FPCNQFG QEPG N EI       R    +   F +F+K DVNG N   V+ FLK+S        G              ++WNFEKFLV  +G  + R+   T    ++ DI +
Sbjct:   39 TVYEYGANTIDGGGFVNFQQYAGKHILFVNVASFCGLT-ATYPELNTLQEELKPFNVTVLGFPCNQFGKQEPGKNSEILLGLKYVRPGGGYVPNFQLFEKGDVNGDNEQKVFSFLKNSCPPTSELFGSPEHLFWDPMKIHDIRWNFEKFLVGPDGVPVMRWFHHTPVRIVQSDIME 213          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX5_RAT (Epididymal secretory glutathione peroxidase OS=Rattus norvegicus GN=Gpx5 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.429e-19
Identity = 64/174 (36.78%), Postives = 89/174 (51.15%), Query Frame = -2
Query:  196 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLK-----------SSAGGFLGDL----VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 654
            ++Y++    ++GK+ +P  ++ GK +L VNVA+ CGLT   Y EL+ L +  K  G  IL FPCNQFG QEPG N EI       R    F   F +F K DVNG     ++ FLK           +S   F   +    ++WNFEKFLV  NG  + R+        ++ DI
Sbjct:   39 TIYNYEALSLNGKERIPFKQYAGKHVLFVNVATYCGLT-IQYPELNALQDDLKQFGLVILGFPCNQFGKQEPGDNTEILPGLKYVRPGKGFLPNFQLFAKGDVNGEKEQEIFTFLKRSCPHPSETVVTSKHTFWEPIKVHDIRWNFEKFLVGPNGVPVMRWFHQAPVSTVKSDI 211          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX2_MOUSE (Glutathione peroxidase 2 OS=Mus musculus GN=Gpx2 PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 2.429e-19
Identity = 61/182 (33.52%), Postives = 88/182 (48.35%), Query Frame = -2
Query:  184 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 657
            KS YD +   +DG+ +  + F+G+ +LI NVAS  G T  +Y++L+ L  ++  +   +L FPCNQFG QE   N EI       R    ++  F +  K DVNG N  PV+ +LK        D                    V WNFEKFL+   G+   RY  +     IE DI++L+
Sbjct:    6 KSFYDLSAIGLDGEKIDFNTFRGRAVLIENVASLUGTTTRDYNQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFSLTQKCDVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRSFQTINIEPDIKRLL 186          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX2_PONPY (Glutathione peroxidase 2 OS=Pongo pygmaeus GN=GPX2 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.412e-19
Identity = 60/182 (32.97%), Postives = 88/182 (48.35%), Query Frame = -2
Query:  184 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEF-----ACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 657
            KS YD +   +DG+ V  + F+G+ +LI NVAS  G T  ++++L+ L  ++  +   +L FPCNQFG QE   N EI          + ++  F +  K +VNG N  PV+ +LK        D                    V WNFEKFL+   G+   RY  T     IE DI++L+
Sbjct:    6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGSGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLL 186          
BLAST of CX297742 vs. ExPASy Swiss-Prot
Match: GPX2_HYLLA (Glutathione peroxidase 2 OS=Hylobates lar GN=GPX2 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.412e-19
Identity = 61/182 (33.52%), Postives = 88/182 (48.35%), Query Frame = -2
Query:  184 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 657
            KS YD +   +DG+ V  + F+G+ +LI NVAS  G T  ++++L+ L  ++  +   +L FPCNQFG QE   N EI       R    ++  F +  K +VNG N  PV+ +LK        D                    V WNFEKFL+   G+   RY  T     IE DI++L+
Sbjct:    6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLL 186          
The following BLAST results are available for this feature:
BLAST of CX297742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX2_RAT3.748e-2034.62Glutathione peroxidase 2 OS=Rattus norvegicus GN=G... [more]
GPXC_DIRIM4.895e-2036.31Glutathione peroxidase OS=Dirofilaria immitis PE=2... [more]
GPX6_HUMAN6.392e-2036.36Glutathione peroxidase 6 OS=Homo sapiens GN=GPX6 P... [more]
GPX3_MOUSE8.349e-2038.51Glutathione peroxidase 3 OS=Mus musculus GN=Gpx3 P... [more]
GPX5_HUMAN1.090e-1936.78Epididymal secretory glutathione peroxidase OS=Hom... [more]
GPX6_MOUSE1.424e-1937.50Glutathione peroxidase 6 OS=Mus musculus GN=Gpx6 P... [more]
GPX5_RAT2.429e-1936.78Epididymal secretory glutathione peroxidase OS=Rat... [more]
GPX2_MOUSE2.429e-1933.52Glutathione peroxidase 2 OS=Mus musculus GN=Gpx2 P... [more]
GPX2_PONPY5.412e-1932.97Glutathione peroxidase 2 OS=Pongo pygmaeus GN=GPX2... [more]
GPX2_HYLLA5.412e-1933.52Glutathione peroxidase 2 OS=Hylobates lar GN=GPX2 ... [more]

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Properties
Property NameValue
Genbank descriptionC06004G05SK RindPdig24 Citrus clementina cDNA clone C06004G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297742 ID=CX297742; Name=CX297742; organism=Citrus clementina; type=EST; length=739bp
GAGGTTTTTTAGTCAAATCTTTAAATATTAGGATATAAAAAACCTATAAC
ATTTCAGGGGAGGCAGGGAAAAATTCATCTATGTGATGCCCGATTCAGAA
ATATACATATACATATATTCAGTTTCTATCTCGTCGATACATCTGAGACA
TGGCCAAGCAGCTCAAGTCAAGATTCATGCCACAACAAGCTTCTGGATGT
CCTTCTCAATTTGGAAAGGCGAGGTAGTTGGTGGATATCTCTCGATGACT
TTACCATTTTTGTCCACTAAGAACTTCTCAAAGTTCCACTTGACAAGGTC
GCCTAAAAATCCCCCAGCACTTGACTTCAAAAACTGGTAAACTGGAGCTG
TGTTTGGTCCATTTACATCAACCTTGTCAAATATGGGAAATTCTGCCTTA
AACCTAGTACAAGCGAATTCCTTGATCTCAGGGTTTGATCCAGGCTCTTG
CCCACCAAATTGATTGCAAGGGAAAGCTAGAATCTCAAATCCTTGAGTCT
TGTACTTCTCATATAAGTGAGAGAGCTCCGAGTAATTAGATGGTGTCAAG
CCACATCTTGAAGCGACATTCACAATCAACAGAACTTTGCCCTTAAACTT
GCTAAGAGGAACATCTTTACCATCAATATCCTTGACGGTGAAGTCATATA
AAGACTTCTCAGTAGCAGCTGTAGCGTGAACACCAAAGGAACGACGTTTC
ACGAAAACCCAGGCAAATTTGAAAGATGGGAAACAGCCC
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