CX297751

Overview
NameCX297751
Unique NameCX297751
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H31_TETTH (Histone H3 OS=Tetrahymena thermophila GN=HHT1 PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.208e-58
Identity = 110/133 (82.71%), Postives = 127/133 (95.49%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTG KAPRKQLASKAARK+AP+TGG+KKPHR++PGTVALREIR+YQKST+LLIRKLPFQRLVR+IA +FK++LRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHA+RVTI +KD+QLARR+RG
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVRDIAHEFKAELRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDMQLARRIRG 133          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H31_TETPY (Histone H3 OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.208e-58
Identity = 110/133 (82.71%), Postives = 127/133 (95.49%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTG KAPRKQLASKAARK+AP+TGG+KKPHR++PGTVALREIR+YQKST+LLIRKLPFQRLVR+IA +FK++LRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHA+RVTI +KD+QLARR+RG
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVRDIAHEFKAELRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDMQLARRIRG 133          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_MASBA (Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 2.883e-58
Identity = 115/133 (86.47%), Postives = 123/133 (92.48%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRK +A+KA RK AP  GGVKKPHR++PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS+AI ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKAVATKA-RKTAPPVGGVKKPHRFRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 132          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H32_CICIN (Histone H3.2 OS=Cichorium intybus PE=2 SV=3)

HSP 1 Score: 224.172 bits (570), Expect = 3.766e-58
Identity = 113/133 (84.96%), Postives = 123/133 (92.48%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KA    A +TGGVKKPHR++PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KD+QLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAWNTLATATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRG 133          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33L2_CAEEL (Histone H3.3-like type 2 OS=Caenorhabditis elegans GN=his-74 PE=2 SV=3)

HSP 1 Score: 223.787 bits (569), Expect = 4.918e-58
Identity = 114/133 (85.71%), Postives = 124/133 (93.23%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRK LA+KAARK+A  TG VKK HR++PGTVALREIRRYQKSTELL+RKLPFQRLVREIAQDFK+DLRFQS+AIGALQE+ EAYLV LFEDTNLCAIHAKRVTI  KD+QLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKALATKAARKSAIVTGSVKKVHRFRPGTVALREIRRYQKSTELLLRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRG 133          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3L1_ARATH (Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g13370 PE=2 SV=3)

HSP 1 Score: 221.476 bits (563), Expect = 2.441e-57
Identity = 111/132 (84.09%), Postives = 123/132 (93.18%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLR 439
            MARTKQ+ARKS GGKAP KQLA+KAARK+AP+TGGVKKPHR++PGTVALREIR+YQKSTELL RKLPFQRLVREIAQDFK+DLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KD+QLARR+R
Sbjct:    1 MARTKQSARKSHGGKAPTKQLATKAARKSAPTTGGVKKPHRFRPGTVALREIRKYQKSTELLNRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIR 132          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_EUPCR (Histone H3 OS=Euplotes crassus PE=3 SV=3)

HSP 1 Score: 220.705 bits (561), Expect = 4.163e-57
Identity = 110/133 (82.71%), Postives = 121/133 (90.98%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARK+ GGKAPRK +  K+ARK A +T G+KKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQ+FK DLRFQSSA+ ALQE+ EAYLVSLFEDTNLCAIHAKRVTI  KD+QLARR+RG
Sbjct:    1 MARTKQTARKNVGGKAPRKHIGQKSARKTASTTAGMKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQEFKGDLRFQSSAVLALQEAAEAYLVSLFEDTNLCAIHAKRVTIMPKDMQLARRIRG 133          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33B_LILLO (Histone H3.3b OS=Lilium longiflorum GN=soH3-1 PE=2 SV=3)

HSP 1 Score: 218.394 bits (555), Expect = 2.066e-56
Identity = 111/134 (82.84%), Postives = 123/134 (91.79%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPS-TGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+ P+  GG+K+P RY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQD+K+DLRFQS A+ ALQE  EAYLV +FEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSIPTGMGGMKRPRRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEGAEAYLVGIFEDTNLCAIHAKRVTIMPKDIQLARRIRG 134          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3L2_ARATH (Histone H3-like 2 OS=Arabidopsis thaliana GN=MGH3 PE=2 SV=3)

HSP 1 Score: 215.698 bits (548), Expect = 1.339e-55
Identity = 111/134 (82.84%), Postives = 121/134 (90.30%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAA-PSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGK PRK+LA+KAARK   P  GGVK+ HR++PGTVALREIR+YQKST+LLIRKLPFQRLVREIAQDFK DLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI SKDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKGPRKELATKAARKTRRPYRGGVKRAHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDFKVDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMSKDIQLARRIRG 134          
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33_TETPY (Histone H3.3 OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 1.749e-55
Identity = 106/133 (79.70%), Postives = 124/133 (93.23%), Query Frame = 2
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTG KAPRKQLA+KAARK+AP +GGVKKPH+++PGTVALREIR+YQK+T+LLIRKLPFQRLVR+IA + K+D+RFQS AI ALQE+ EAYLV LFEDTNLCAIHA+RVTI +KD+QLARR+RG
Sbjct:    1 MARTKQTARKSTGVKAPRKQLATKAARKSAPVSGGVKKPHKFRPGTVALREIRKYQKTTDLLIRKLPFQRLVRDIAMEMKNDIRFQSQAILALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDMQLARRIRG 133          
The following BLAST results are available for this feature:
BLAST of CX297751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
H31_TETTH2.208e-5882.71Histone H3 OS=Tetrahymena thermophila GN=HHT1 PE=1... [more]
H31_TETPY2.208e-5882.71Histone H3 OS=Tetrahymena pyriformis PE=1 SV=2[more]
H3_MASBA2.883e-5886.47Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1[more]
H32_CICIN3.766e-5884.96Histone H3.2 OS=Cichorium intybus PE=2 SV=3[more]
H33L2_CAEEL4.918e-5885.71Histone H3.3-like type 2 OS=Caenorhabditis elegans... [more]
H3L1_ARATH2.441e-5784.09Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g1... [more]
H3_EUPCR4.163e-5782.71Histone H3 OS=Euplotes crassus PE=3 SV=3[more]
H33B_LILLO2.066e-5682.84Histone H3.3b OS=Lilium longiflorum GN=soH3-1 PE=2... [more]
H3L2_ARATH1.339e-5582.84Histone H3-like 2 OS=Arabidopsis thaliana GN=MGH3 ... [more]
H33_TETPY1.749e-5579.70Histone H3.3 OS=Tetrahymena pyriformis PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC06004H02SK RindPdig24 Citrus clementina cDNA clone C06004H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297751 ID=CX297751; Name=CX297751; organism=Citrus clementina; type=EST; length=585bp
TTTCATCACAAAAACACTTTTTTCATCAAGTCTATCATCCAAGATGGCTC
GTACCAAGCAGACTGCCCGTAAGTCCACTGGTGGCAAGGCTCCCCGTAAG
CAGCTCGCTTCCAAGGCCGCCCGCAAGGCCGCCCCCTCCACCGGAGGTGT
CAAGAAGCCCCACCGCTACAAGCCCGGTACCGTCGCTCTTCGCGAGATTC
GCCGCTACCAGAAGTCCACTGAGCTTTTGATTCGCAAGCTTCCCTTCCAG
CGTCTGGTCCGTGAGATCGCCCAGGACTTCAAGTCCGATCTCCGCTTCCA
GTCCTCTGCCATCGGTGCTCTCCAGGAGTCCGTTGAGGCCTACCTCGTCT
CTCTCTTCGAAGACACCAACCTCTGCGCTATCCACGCCAAGCGTGTCACC
ATCCAGTCCAAGGACATCCAGTTGGCCCGCCGTCTCCGTGGCGAGCGCTC
GTAATTTTTCTTTTCAACGAGCTGGTTTTCTGAAAGGCGATCATGGGGTT
TGTTTTTATCTTTTTATCATGACTACTGGCGATACATGATGGGTTTGCTT
TCAAATATCAATGGGTTTCGGCACCGGGTTGCCTC
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