CX297751

Overview
NameCX297751
Unique NameCX297751
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H32_TETMI (Histone H3.2 (Fragment) OS=Tetrahymena mimbres PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-14
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHR 166
            MARTKQTARKSTG KAPRKQLASKAARK+AP+TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H32_TETMA (Histone H3.2 (Fragment) OS=Tetrahymena malaccensis PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-14
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHR 166
            MARTKQTARKSTG KAPRKQLASKAARK+AP+TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H32_TETLE (Histone H3.2 (Fragment) OS=Tetrahymena leucophrys PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-14
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHR 166
            MARTKQTARKSTG KAPRKQLASKAARK+AP+TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H32_TETHY (Histone H3.2 (Fragment) OS=Tetrahymena hyperangularis PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-14
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHR 166
            MARTKQTARKSTG KAPRKQLASKAARK+AP+TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H32_TETFU (Histone H3.2 (Fragment) OS=Tetrahymena furgasoni PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-14
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHR 166
            MARTKQTARKSTG KAPRKQLASKAARK+AP+TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H32_TETEL (Histone H3.2 (Fragment) OS=Tetrahymena elliotti PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-14
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHR 166
            MARTKQTARKSTG KAPRKQLASKAARK+AP+TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H32_TETCU (Histone H3.2 (Fragment) OS=Tetrahymena caudata PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-14
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHR 166
            MARTKQTARKSTG KAPRKQLASKAARK+AP+TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H32_TETCA (Histone H3.2 (Fragment) OS=Tetrahymena capricornis PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-14
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHR 166
            MARTKQTARKSTG KAPRKQLASKAARK+AP+TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H32_TETAU (Histone H3.2 (Fragment) OS=Tetrahymena australis PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-14
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHR 166
            MARTKQTARKSTG KAPRKQLASKAARK+AP+TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H32_TETAM (Histone H3.2 (Fragment) OS=Tetrahymena americanus PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-14
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHR 166
            MARTKQTARKSTG KAPRKQLASKAARK+AP+TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
The following BLAST results are available for this feature:
BLAST of CX297751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
H32_TETMI2.555e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena mimbres PE=... [more]
H32_TETMA2.555e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena malaccensis... [more]
H32_TETLE2.555e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena leucophrys ... [more]
H32_TETHY2.555e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena hyperangula... [more]
H32_TETFU2.555e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena furgasoni P... [more]
H32_TETEL2.555e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena elliotti PE... [more]
H32_TETCU2.555e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena caudata PE=... [more]
H32_TETCA2.555e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena capricornis... [more]
H32_TETAU2.555e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena australis P... [more]
H32_TETAM2.555e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena americanus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06004H02SK RindPdig24 Citrus clementina cDNA clone C06004H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297751 ID=CX297751; Name=CX297751; organism=Citrus clementina; type=EST; length=585bp
TTTCATCACAAAAACACTTTTTTCATCAAGTCTATCATCCAAGATGGCTC
GTACCAAGCAGACTGCCCGTAAGTCCACTGGTGGCAAGGCTCCCCGTAAG
CAGCTCGCTTCCAAGGCCGCCCGCAAGGCCGCCCCCTCCACCGGAGGTGT
CAAGAAGCCCCACCGCTACAAGCCCGGTACCGTCGCTCTTCGCGAGATTC
GCCGCTACCAGAAGTCCACTGAGCTTTTGATTCGCAAGCTTCCCTTCCAG
CGTCTGGTCCGTGAGATCGCCCAGGACTTCAAGTCCGATCTCCGCTTCCA
GTCCTCTGCCATCGGTGCTCTCCAGGAGTCCGTTGAGGCCTACCTCGTCT
CTCTCTTCGAAGACACCAACCTCTGCGCTATCCACGCCAAGCGTGTCACC
ATCCAGTCCAAGGACATCCAGTTGGCCCGCCGTCTCCGTGGCGAGCGCTC
GTAATTTTTCTTTTCAACGAGCTGGTTTTCTGAAAGGCGATCATGGGGTT
TGTTTTTATCTTTTTATCATGACTACTGGCGATACATGATGGGTTTGCTT
TCAAATATCAATGGGTTTCGGCACCGGGTTGCCTC
back to top