CX297751

Overview
NameCX297751
Unique NameCX297751
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H32_TETBO (Histone H3.2 (Fragment) OS=Tetrahymena borealis PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.825e-13
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHR 166
            MAR KQTARKSTG +APRKQLASKAARK+AP+TGG+KKPHR
Sbjct:    1 MARAKQTARKSTGAEAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3V1_DICDI (Histone H3.v1 OS=Dictyostelium discoideum GN=H3v1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.454e-11
Identity = 45/126 (35.71%), Postives = 62/126 (49.21%), Query Frame = 2 
Query:   62 TARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLR 439
            T+   T    PR ++         P+T   K+  R     +    IRR + S + +I +LP  RLVREI   F   LR    A+ A+Q + EAYL  L ED+ L A HA R TI+S D+   +R R
Sbjct:  495 TSASITTPTTPRIRVQRTTTTPTTPTTPRKKRRRR-----LVASVIRRLRNSVDFMIPRLPLSRLVREIMCLFDDGLRITPGALLAIQTTTEAYLTRLMEDSGLLASHAGRKTIRSVDMYAWKRAR 615
The following BLAST results are available for this feature:
BLAST of CX297751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
H32_TETBO2.825e-1385.37Histone H3.2 (Fragment) OS=Tetrahymena borealis PE... [more]
H3V1_DICDI3.454e-1135.71Histone H3.v1 OS=Dictyostelium discoideum GN=H3v1 ... [more]

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Properties
Property NameValue
Genbank descriptionC06004H02SK RindPdig24 Citrus clementina cDNA clone C06004H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297751 ID=CX297751; Name=CX297751; organism=Citrus clementina; type=EST; length=585bp
TTTCATCACAAAAACACTTTTTTCATCAAGTCTATCATCCAAGATGGCTC
GTACCAAGCAGACTGCCCGTAAGTCCACTGGTGGCAAGGCTCCCCGTAAG
CAGCTCGCTTCCAAGGCCGCCCGCAAGGCCGCCCCCTCCACCGGAGGTGT
CAAGAAGCCCCACCGCTACAAGCCCGGTACCGTCGCTCTTCGCGAGATTC
GCCGCTACCAGAAGTCCACTGAGCTTTTGATTCGCAAGCTTCCCTTCCAG
CGTCTGGTCCGTGAGATCGCCCAGGACTTCAAGTCCGATCTCCGCTTCCA
GTCCTCTGCCATCGGTGCTCTCCAGGAGTCCGTTGAGGCCTACCTCGTCT
CTCTCTTCGAAGACACCAACCTCTGCGCTATCCACGCCAAGCGTGTCACC
ATCCAGTCCAAGGACATCCAGTTGGCCCGCCGTCTCCGTGGCGAGCGCTC
GTAATTTTTCTTTTCAACGAGCTGGTTTTCTGAAAGGCGATCATGGGGTT
TGTTTTTATCTTTTTATCATGACTACTGGCGATACATGATGGGTTTGCTT
TCAAATATCAATGGGTTTCGGCACCGGGTTGCCTC
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