CX297751

Overview
NameCX297751
Unique NameCX297751
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_ASHGO (Histone H3 OS=Ashbya gossypii GN=HHT1 PE=3 SV=3)

HSP 1 Score: 246.514 bits (628), Expect = 7.085e-65
Identity = 127/133 (95.49%), Postives = 131/133 (98.50%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLASKAARK+APSTGGVKKPHRYKPGTVALREIRR+QKSTELLIRKLPFQRLVREIAQDFK+DLRFQSSAIGALQESVEAYLVSLFEDTNL AIHAKRVTIQ KDI+LARRLRG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33_LODEL (Histone H3.3 OS=Lodderomyces elongisporus GN=HHT3 PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 9.254e-65
Identity = 126/133 (94.74%), Postives = 130/133 (97.74%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLASKAARK+AP +GGVKKPHRYKPGTVALREIRR+QKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQE+VEAYLV LFEDTNLCAIHAKRVTIQ KDIQLARRLRG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVSGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDIQLARRLRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33_CANAL (Histone H3.3 OS=Candida albicans GN=HHT3 PE=3 SV=3)

HSP 1 Score: 244.973 bits (624), Expect = 2.062e-64
Identity = 125/133 (93.98%), Postives = 130/133 (97.74%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLASKAARK+AP +GGVKKPHRYKPGTVALREIRR+QKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQE+VEAYLV LFEDTNLCAIHAKRVTIQ KD+QLARRLRG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVSGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDMQLARRLRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33_SCHPO (Histone H3.3 OS=Schizosaccharomyces pombe GN=hht3 PE=1 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 2.692e-64
Identity = 125/133 (93.98%), Postives = 130/133 (97.74%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLASKAARKAAP+TGGVKKPHRY+P TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQSSAIGALQE+VEAYLVSLFEDTNLCAIH KRVTIQ KD+QLARRLRG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPPTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33_TRIPS (Histone H3.3 OS=Trichinella pseudospiralis GN=HHT3 PE=2 SV=3)

HSP 1 Score: 242.276 bits (617), Expect = 1.336e-63
Identity = 122/133 (91.73%), Postives = 129/133 (96.99%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+APSTGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS+AIGALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33_XENTR (Histone H3.3 OS=Xenopus tropicalis GN=TGas113e22.1 PE=1 SV=3)

HSP 1 Score: 241.506 bits (615), Expect = 2.279e-63
Identity = 122/133 (91.73%), Postives = 129/133 (96.99%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+APSTGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS+AIGALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33_XENLA (Histone H3.3 OS=Xenopus laevis PE=1 SV=3)

HSP 1 Score: 241.506 bits (615), Expect = 2.279e-63
Identity = 122/133 (91.73%), Postives = 129/133 (96.99%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+APSTGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS+AIGALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33_SPISO (Histone H3.3 OS=Spisula solidissima PE=1 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 2.279e-63
Identity = 122/133 (91.73%), Postives = 129/133 (96.99%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+APSTGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS+AIGALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33_RAT (Histone H3.3 OS=Rattus norvegicus GN=H3f3b PE=1 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 2.279e-63
Identity = 122/133 (91.73%), Postives = 129/133 (96.99%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+APSTGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS+AIGALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H33_RABIT (Histone H3.3 OS=Oryctolagus cuniculus GN=H3F3A PE=2 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 2.279e-63
Identity = 122/133 (91.73%), Postives = 129/133 (96.99%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+APSTGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS+AIGALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
The following BLAST results are available for this feature:
BLAST of CX297751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
H3_ASHGO7.085e-6595.49Histone H3 OS=Ashbya gossypii GN=HHT1 PE=3 SV=3[more]
H33_LODEL9.254e-6594.74Histone H3.3 OS=Lodderomyces elongisporus GN=HHT3 ... [more]
H33_CANAL2.062e-6493.98Histone H3.3 OS=Candida albicans GN=HHT3 PE=3 SV=3[more]
H33_SCHPO2.692e-6493.98Histone H3.3 OS=Schizosaccharomyces pombe GN=hht3 ... [more]
H33_TRIPS1.336e-6391.73Histone H3.3 OS=Trichinella pseudospiralis GN=HHT3... [more]
H33_XENTR2.279e-6391.73Histone H3.3 OS=Xenopus tropicalis GN=TGas113e22.1... [more]
H33_XENLA2.279e-6391.73Histone H3.3 OS=Xenopus laevis PE=1 SV=3[more]
H33_SPISO2.279e-6391.73Histone H3.3 OS=Spisula solidissima PE=1 SV=2[more]
H33_RAT2.279e-6391.73Histone H3.3 OS=Rattus norvegicus GN=H3f3b PE=1 SV... [more]
H33_RABIT2.279e-6391.73Histone H3.3 OS=Oryctolagus cuniculus GN=H3F3A PE=... [more]

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Properties
Property NameValue
Genbank descriptionC06004H02SK RindPdig24 Citrus clementina cDNA clone C06004H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297751 ID=CX297751; Name=CX297751; organism=Citrus clementina; type=EST; length=585bp
TTTCATCACAAAAACACTTTTTTCATCAAGTCTATCATCCAAGATGGCTC
GTACCAAGCAGACTGCCCGTAAGTCCACTGGTGGCAAGGCTCCCCGTAAG
CAGCTCGCTTCCAAGGCCGCCCGCAAGGCCGCCCCCTCCACCGGAGGTGT
CAAGAAGCCCCACCGCTACAAGCCCGGTACCGTCGCTCTTCGCGAGATTC
GCCGCTACCAGAAGTCCACTGAGCTTTTGATTCGCAAGCTTCCCTTCCAG
CGTCTGGTCCGTGAGATCGCCCAGGACTTCAAGTCCGATCTCCGCTTCCA
GTCCTCTGCCATCGGTGCTCTCCAGGAGTCCGTTGAGGCCTACCTCGTCT
CTCTCTTCGAAGACACCAACCTCTGCGCTATCCACGCCAAGCGTGTCACC
ATCCAGTCCAAGGACATCCAGTTGGCCCGCCGTCTCCGTGGCGAGCGCTC
GTAATTTTTCTTTTCAACGAGCTGGTTTTCTGAAAGGCGATCATGGGGTT
TGTTTTTATCTTTTTATCATGACTACTGGCGATACATGATGGGTTTGCTT
TCAAATATCAATGGGTTTCGGCACCGGGTTGCCTC
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