CX297751

Overview
NameCX297751
Unique NameCX297751
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_TIGCA (Histone H3 OS=Tigriopus californicus PE=3 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 3.291e-62
Identity = 120/133 (90.23%), Postives = 128/133 (96.24%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_PLADU (Histone H3 OS=Platynereis dumerilii PE=3 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 3.291e-62
Identity = 120/133 (90.23%), Postives = 128/133 (96.24%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_DROME (Histone H3 OS=Drosophila melanogaster GN=His3 PE=1 SV=4)

HSP 1 Score: 237.654 bits (605), Expect = 3.291e-62
Identity = 120/133 (90.23%), Postives = 128/133 (96.24%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_DROHY (Histone H3 OS=Drosophila hydei GN=His3 PE=3 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 3.291e-62
Identity = 120/133 (90.23%), Postives = 128/133 (96.24%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_CHITH (Histone H3 OS=Chironomus thummi thummi PE=3 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 3.291e-62
Identity = 120/133 (90.23%), Postives = 128/133 (96.24%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H32_XENTR (Histone H3.2 OS=Xenopus tropicalis GN=TGas081o10.1 PE=2 SV=3)

HSP 1 Score: 237.654 bits (605), Expect = 3.291e-62
Identity = 120/133 (90.23%), Postives = 128/133 (96.24%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H32_XENLA (Histone H3.2 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 3.291e-62
Identity = 120/133 (90.23%), Postives = 128/133 (96.24%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H32_PORAF (Histone H3.2 OS=Poroderma africanus PE=1 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 3.291e-62
Identity = 120/133 (90.23%), Postives = 128/133 (96.24%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H32_ONCMY (Histone H3.2 OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 3.291e-62
Identity = 120/133 (90.23%), Postives = 128/133 (96.24%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H32_MUSPA (Histone H3.2 OS=Mus pahari GN=H312 PE=2 SV=3)

HSP 1 Score: 237.654 bits (605), Expect = 3.291e-62
Identity = 120/133 (90.23%), Postives = 128/133 (96.24%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
The following BLAST results are available for this feature:
BLAST of CX297751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
H3_TIGCA3.291e-6290.23Histone H3 OS=Tigriopus californicus PE=3 SV=2[more]
H3_PLADU3.291e-6290.23Histone H3 OS=Platynereis dumerilii PE=3 SV=2[more]
H3_DROME3.291e-6290.23Histone H3 OS=Drosophila melanogaster GN=His3 PE=1... [more]
H3_DROHY3.291e-6290.23Histone H3 OS=Drosophila hydei GN=His3 PE=3 SV=2[more]
H3_CHITH3.291e-6290.23Histone H3 OS=Chironomus thummi thummi PE=3 SV=2[more]
H32_XENTR3.291e-6290.23Histone H3.2 OS=Xenopus tropicalis GN=TGas081o10.1... [more]
H32_XENLA3.291e-6290.23Histone H3.2 OS=Xenopus laevis PE=1 SV=2[more]
H32_PORAF3.291e-6290.23Histone H3.2 OS=Poroderma africanus PE=1 SV=2[more]
H32_ONCMY3.291e-6290.23Histone H3.2 OS=Oncorhynchus mykiss PE=1 SV=2[more]
H32_MUSPA3.291e-6290.23Histone H3.2 OS=Mus pahari GN=H312 PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC06004H02SK RindPdig24 Citrus clementina cDNA clone C06004H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297751 ID=CX297751; Name=CX297751; organism=Citrus clementina; type=EST; length=585bp
TTTCATCACAAAAACACTTTTTTCATCAAGTCTATCATCCAAGATGGCTC
GTACCAAGCAGACTGCCCGTAAGTCCACTGGTGGCAAGGCTCCCCGTAAG
CAGCTCGCTTCCAAGGCCGCCCGCAAGGCCGCCCCCTCCACCGGAGGTGT
CAAGAAGCCCCACCGCTACAAGCCCGGTACCGTCGCTCTTCGCGAGATTC
GCCGCTACCAGAAGTCCACTGAGCTTTTGATTCGCAAGCTTCCCTTCCAG
CGTCTGGTCCGTGAGATCGCCCAGGACTTCAAGTCCGATCTCCGCTTCCA
GTCCTCTGCCATCGGTGCTCTCCAGGAGTCCGTTGAGGCCTACCTCGTCT
CTCTCTTCGAAGACACCAACCTCTGCGCTATCCACGCCAAGCGTGTCACC
ATCCAGTCCAAGGACATCCAGTTGGCCCGCCGTCTCCGTGGCGAGCGCTC
GTAATTTTTCTTTTCAACGAGCTGGTTTTCTGAAAGGCGATCATGGGGTT
TGTTTTTATCTTTTTATCATGACTACTGGCGATACATGATGGGTTTGCTT
TCAAATATCAATGGGTTTCGGCACCGGGTTGCCTC
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