CX297751

Overview
NameCX297751
Unique NameCX297751
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H32_ARATH (Histone H3.2 OS=Arabidopsis thaliana GN=HTR2 PE=1 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 5.614e-62
Identity = 118/133 (88.72%), Postives = 128/133 (96.24%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHR++PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_STRDR (Histone H3, embryonic OS=Strongylocentrotus droebachiensis PE=2 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 9.576e-62
Identity = 119/133 (89.47%), Postives = 128/133 (96.24%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK++LRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_SOLST (Histone H3, embryonic OS=Solaster stimpsoni PE=2 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 9.576e-62
Identity = 119/133 (89.47%), Postives = 128/133 (96.24%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK++LRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_PYCHE (Histone H3, embryonic OS=Pycnopodia helianthoides PE=2 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 9.576e-62
Identity = 119/133 (89.47%), Postives = 128/133 (96.24%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK++LRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_PSAMI (Histone H3, embryonic OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 9.576e-62
Identity = 119/133 (89.47%), Postives = 128/133 (96.24%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK++LRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_PISOC (Histone H3, embryonic OS=Pisaster ochraceus PE=2 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 9.576e-62
Identity = 119/133 (89.47%), Postives = 128/133 (96.24%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK++LRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_PISBR (Histone H3, embryonic OS=Pisaster brevispinus PE=2 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 9.576e-62
Identity = 119/133 (89.47%), Postives = 128/133 (96.24%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK++LRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_PARLI (Histone H3, embryonic OS=Paracentrotus lividus PE=2 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 9.576e-62
Identity = 119/133 (89.47%), Postives = 128/133 (96.24%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK++LRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_LYTPI (Histone H3, embryonic OS=Lytechinus pictus PE=2 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 9.576e-62
Identity = 119/133 (89.47%), Postives = 128/133 (96.24%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK++LRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of CX297751 vs. ExPASy Swiss-Prot
Match: H3_DERIM (Histone H3, embryonic OS=Dermasterias imbricata PE=2 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 9.576e-62
Identity = 119/133 (89.47%), Postives = 128/133 (96.24%), Query Frame = 2 
Query:   44 MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRG 442
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRY+PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK++LRFQSSA+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDIQLARR+RG
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
The following BLAST results are available for this feature:
BLAST of CX297751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
H32_ARATH5.614e-6288.72Histone H3.2 OS=Arabidopsis thaliana GN=HTR2 PE=1 ... [more]
H3_STRDR9.576e-6289.47Histone H3, embryonic OS=Strongylocentrotus droeba... [more]
H3_SOLST9.576e-6289.47Histone H3, embryonic OS=Solaster stimpsoni PE=2 S... [more]
H3_PYCHE9.576e-6289.47Histone H3, embryonic OS=Pycnopodia helianthoides ... [more]
H3_PSAMI9.576e-6289.47Histone H3, embryonic OS=Psammechinus miliaris PE=... [more]
H3_PISOC9.576e-6289.47Histone H3, embryonic OS=Pisaster ochraceus PE=2 S... [more]
H3_PISBR9.576e-6289.47Histone H3, embryonic OS=Pisaster brevispinus PE=2... [more]
H3_PARLI9.576e-6289.47Histone H3, embryonic OS=Paracentrotus lividus PE=... [more]
H3_LYTPI9.576e-6289.47Histone H3, embryonic OS=Lytechinus pictus PE=2 SV... [more]
H3_DERIM9.576e-6289.47Histone H3, embryonic OS=Dermasterias imbricata PE... [more]

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Properties
Property NameValue
Genbank descriptionC06004H02SK RindPdig24 Citrus clementina cDNA clone C06004H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297751 ID=CX297751; Name=CX297751; organism=Citrus clementina; type=EST; length=585bp
TTTCATCACAAAAACACTTTTTTCATCAAGTCTATCATCCAAGATGGCTC
GTACCAAGCAGACTGCCCGTAAGTCCACTGGTGGCAAGGCTCCCCGTAAG
CAGCTCGCTTCCAAGGCCGCCCGCAAGGCCGCCCCCTCCACCGGAGGTGT
CAAGAAGCCCCACCGCTACAAGCCCGGTACCGTCGCTCTTCGCGAGATTC
GCCGCTACCAGAAGTCCACTGAGCTTTTGATTCGCAAGCTTCCCTTCCAG
CGTCTGGTCCGTGAGATCGCCCAGGACTTCAAGTCCGATCTCCGCTTCCA
GTCCTCTGCCATCGGTGCTCTCCAGGAGTCCGTTGAGGCCTACCTCGTCT
CTCTCTTCGAAGACACCAACCTCTGCGCTATCCACGCCAAGCGTGTCACC
ATCCAGTCCAAGGACATCCAGTTGGCCCGCCGTCTCCGTGGCGAGCGCTC
GTAATTTTTCTTTTCAACGAGCTGGTTTTCTGAAAGGCGATCATGGGGTT
TGTTTTTATCTTTTTATCATGACTACTGGCGATACATGATGGGTTTGCTT
TCAAATATCAATGGGTTTCGGCACCGGGTTGCCTC
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