CX297754

Overview
NameCX297754
Unique NameCX297754
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLN11_ARATH (Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana GN=GLN1-1 PE=1 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 2.133e-47
Identity = 88/96 (91.67%), Postives = 92/96 (95.83%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 290
            GG+E+IKKAI+KLGLRH EHIAAYGEGNERRLTG HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPY+VTSMIAETTILW P
Sbjct:  261 GGYEIIKKAIDKLGLRHKEHIAAYGEGNERRLTGHHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWNP 356          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLN12_ARATH (Glutamine synthetase cytosolic isozyme 1-2 OS=Arabidopsis thaliana GN=GLN1-2 PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 2.786e-47
Identity = 88/96 (91.67%), Postives = 92/96 (95.83%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 290
            GG+E+IKKAIEKLGLRH EHI+AYGEGNERRLTG HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETT+LW P
Sbjct:  261 GGYEIIKKAIEKLGLRHKEHISAYGEGNERRLTGHHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLLWNP 356          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLN14_ARATH (Glutamine synthetase cytosolic isozyme 1-4 OS=Arabidopsis thaliana GN=GLN1-4 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.639e-47
Identity = 89/96 (92.71%), Postives = 92/96 (95.83%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 290
            GG+EVIKKAIEKLGLRH EHIAAYGEGNERRLTGKHETADINTF WGVANRGASIRVGRDTE+ GKGYFEDRRPASNMDPY VTSMIAE+TILWKP
Sbjct:  261 GGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINTFLWGVANRGASIRVGRDTEQAGKGYFEDRRPASNMDPYTVTSMIAESTILWKP 356          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLN12_ORYSJ (Glutamine synthetase cytosolic isozyme 1-2 OS=Oryza sativa subsp. japonica GN=GLN1-2 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.639e-47
Identity = 88/95 (92.63%), Postives = 92/95 (96.84%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 287
            GG+EVIKKAI+KL LRH EHIAAYGEGNERRLTG+HETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVT MIAETT+LWK
Sbjct:  261 GGYEVIKKAIDKLALRHKEHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTGMIAETTLLWK 355          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA5_MAIZE (Glutamine synthetase root isozyme 5 OS=Zea mays GN=GS1-5 PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 8.106e-47
Identity = 88/95 (92.63%), Postives = 92/95 (96.84%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 287
            GG+EVIK+AIEKLG RH EHIAAYGEGNERRLTG+HETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVT MIA+TTILWK
Sbjct:  261 GGYEVIKEAIEKLGRRHREHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTGMIADTTILWK 355          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.383e-46
Identity = 88/96 (91.67%), Postives = 91/96 (94.79%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 290
            GG+EVIK AIEKLG RH EHIAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  261 GGYEVIKSAIEKLGKRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA1_MAIZE (Glutamine synthetase root isozyme 1 OS=Zea mays GN=GLN6 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 8.962e-46
Identity = 86/94 (91.49%), Postives = 90/94 (95.74%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 284
            GG+EVIK AI+KLG RH EHIAAYGEGNERRLTG+HETADINTFKWGVANRGASIRVGRDTE+EGKGYFEDRRPASNMDPYVVT MIAETTILW
Sbjct:  261 GGYEVIKAAIDKLGKRHKEHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEREGKGYFEDRRPASNMDPYVVTGMIAETTILW 354          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA1_SOYBN (Glutamine synthetase cytosolic isozyme 1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.170e-45
Identity = 85/96 (88.54%), Postives = 91/96 (94.79%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 290
            GG+EVIK AI+KLG +H EHIAAYGEGNERRLTG+HETADINTF WGVANRGAS+RVGRDTEK GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  260 GGYEVIKAAIDKLGKKHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASVRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 355          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA1_MEDSA (Glutamine synthetase cytosolic isozyme OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.170e-45
Identity = 86/96 (89.58%), Postives = 91/96 (94.79%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 290
            GG+EVI KAIEKLG +H EHIAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRP+SNMDPYVVTSMIA+TTILWKP
Sbjct:  261 GGYEVILKAIEKLGKKHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPSSNMDPYVVTSMIADTTILWKP 356          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA3_PHAVU (Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=Gln-gamma PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 1.529e-45
Identity = 87/96 (90.62%), Postives = 90/96 (93.75%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 290
            GG+EVIKKAI KL  RH EHIAAYGEGNERRLTGKHETAD+NTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETT+LWKP
Sbjct:  261 GGYEVIKKAITKLEKRHKEHIAAYGEGNERRLTGKHETADMNTFIWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTLLWKP 356          
The following BLAST results are available for this feature:
BLAST of CX297754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLN11_ARATH2.133e-4791.67Glutamine synthetase cytosolic isozyme 1-1 OS=Arab... [more]
GLN12_ARATH2.786e-4791.67Glutamine synthetase cytosolic isozyme 1-2 OS=Arab... [more]
GLN14_ARATH3.639e-4792.71Glutamine synthetase cytosolic isozyme 1-4 OS=Arab... [more]
GLN12_ORYSJ3.639e-4792.63Glutamine synthetase cytosolic isozyme 1-2 OS=Oryz... [more]
GLNA5_MAIZE8.106e-4792.63Glutamine synthetase root isozyme 5 OS=Zea mays GN... [more]
GLNA_VIGAC1.383e-4691.67Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]
GLNA1_MAIZE8.962e-4691.49Glutamine synthetase root isozyme 1 OS=Zea mays GN... [more]
GLNA1_SOYBN1.170e-4588.54Glutamine synthetase cytosolic isozyme 1 OS=Glycin... [more]
GLNA1_MEDSA1.170e-4589.58Glutamine synthetase cytosolic isozyme OS=Medicago... [more]
GLNA3_PHAVU1.529e-4590.63Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=... [more]

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Properties
Property NameValue
Genbank descriptionC06004H05SK RindPdig24 Citrus clementina cDNA clone C06004H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297754 ID=CX297754; Name=CX297754; organism=Citrus clementina; type=EST; length=563bp
AGGGAGGCTTTGAGGTTATTAAGAAAGCAATTGAGAAACTTGGACTGAGG
CACAGTGAGCACATTGCCGCATATGGTGAAGGCAATGAACGCCGACTCAC
TGGCAAACATGAAACAGCTGACATCAACACTTTCAAATGGGGTGTTGCTA
ACCGTGGGGCATCAATCCGTGTTGGACGAGACACAGAGAAAGAAGGAAAG
GGTTACTTTGAGGACAGGAGACCTGCTTCTAACATGGATCCATATGTTGT
CACCTCCATGATTGCAGAAACCACTATTCTGTGGAAGCCATGAATGCTCC
TCTAGCAACCTTTGAAATATTTTGTTTGATCTGCTGGCTTTACTCAGGAT
TCACGAGTTCACGACAGAATTGTGTTCTGCTAAGGATGCTTTATTAGTAG
TAGTTCAGCTTTTGTCTTGTTTCAATCTCTGCCCCTGTATTTGCAACAGT
GGGTTCATTGCTTCCTGCTGTCCTATTGGGTTGAATAATGTAAACATTTA
ATTTAATAACATTATGGAAGGGTCAATTCCTTTTGTTCAAAAAAAAAAAA
AAAAAAAAAAAAA
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