CX297754

Overview
NameCX297754
Unique NameCX297754
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA2_SOYBN (Glutamine synthetase cytosolic isozyme 2 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.529e-45
Identity = 87/96 (90.62%), Postives = 90/96 (93.75%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 290
            GG+EVIKKAI KL  RH EHIAAYGEGNERRLTG+HETAD+NTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  261 GGYEVIKKAIAKLEKRHKEHIAAYGEGNERRLTGRHETADMNTFVWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA1_PHAVU (Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.529e-45
Identity = 86/96 (89.58%), Postives = 90/96 (93.75%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 290
            GG+E IK AI+KLG RH EHIAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  261 GGYEEIKSAIQKLGKRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLN13_ORYSJ (Glutamine synthetase cytosolic isozyme 1-3 OS=Oryza sativa subsp. japonica GN=GLN1-3 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.529e-45
Identity = 83/96 (86.46%), Postives = 93/96 (96.88%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 290
            GG+EVIKKAI+KLG+RH EHIAAYG+GNERRLTG+HETADIN F WGVANRGAS+RVGRDTEK+GKGYFEDRRPASNMDPY+VT+MIAETTILW+P
Sbjct:  263 GGYEVIKKAIKKLGMRHREHIAAYGDGNERRLTGRHETADINNFVWGVANRGASVRVGRDTEKDGKGYFEDRRPASNMDPYLVTAMIAETTILWEP 358          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA1_PEA (Glutamine synthetase nodule isozyme OS=Pisum sativum GN=GS1 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 2.608e-45
Identity = 87/96 (90.62%), Postives = 91/96 (94.79%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 290
            GG+E+IKKAIEKLG R  EHI+AYGEGNERRLTGKHETADINTF WGVANRGAS+RVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL KP
Sbjct:  260 GGYEIIKKAIEKLGKRLPEHISAYGEGNERRLTGKHETADINTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILLKP 355          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLN11_ORYSJ (Glutamine synthetase cytosolic isozyme 1-1 OS=Oryza sativa subsp. japonica GN=GLN1-1 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 3.406e-45
Identity = 82/96 (85.42%), Postives = 91/96 (94.79%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 290
            GG+E+IK AIEKL LRH EHI+AYGEGNERRLTG+HETADINTF WGVANRGAS+RVGR+TE+ GKGYFEDRRPASNMDPY+VTSMIAETTI+WKP
Sbjct:  261 GGYEIIKSAIEKLKLRHKEHISAYGEGNERRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYIVTSMIAETTIIWKP 356          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA_LUPLU (Glutamine synthetase nodule isozyme OS=Lupinus luteus PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 9.909e-45
Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 281
            GG+EVIKKAIEKLG RH+EHIAAYGEGNERRLTG+HETADI+TF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETT+L
Sbjct:  261 GGYEVIKKAIEKLGKRHNEHIAAYGEGNERRLTGRHETADISTFFWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLL 353          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA3_MAIZE (Glutamine synthetase root isozyme 3 OS=Zea mays GN=GLN4 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.207e-44
Identity = 83/96 (86.46%), Postives = 90/96 (93.75%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 290
            GG+EVIK AIEKL LRH EHIAAYGEGN+ RLTG+HETADINTF WGVANRGAS+RVGR+TE+ GKGYFEDRRPASNMDPYVVTSMIAETTI+WKP
Sbjct:  261 GGYEVIKAAIEKLKLRHREHIAAYGEGNDGRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTSMIAETTIIWKP 356          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA2_MAIZE (Glutamine synthetase root isozyme 2 OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.207e-44
Identity = 83/96 (86.46%), Postives = 90/96 (93.75%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 290
            GG+EVIKKAI KLGLRH EHIAAYG+GNER LTG+HETADINTF WGV NRGAS+RVGRDTEKEGKGYFEDRRPASNMDPYVVT +IAETT+LW+P
Sbjct:  260 GGYEVIKKAIGKLGLRHREHIAAYGDGNERPLTGRHETADINTFVWGVPNRGASVRVGRDTEKEGKGYFEDRRPASNMDPYVVTCLIAETTMLWEP 355          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLN13_ARATH (Glutamine synthetase cytosolic isozyme 1-3 OS=Arabidopsis thaliana GN=GLN1-3 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.883e-44
Identity = 86/93 (92.47%), Postives = 88/93 (94.62%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 281
            GG EVIKKAI KL L+H EHIAAYGEGNERRLTGKHETADINTF WGVANRGAS+RVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL
Sbjct:  261 GGLEVIKKAIGKLQLKHKEHIAAYGEGNERRLTGKHETADINTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 353          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA_NICPL (Glutamine synthetase OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.096e-43
Identity = 83/95 (87.37%), Postives = 91/95 (95.79%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 287
            GG+EVI KAIEKLGL+H EHIAAYGEGNERRLTGKHETA+I+TFKWGVANRGAS+RVGRDTEK GKGYFEDRRPASNMDPYVVT+MIA+TTI+ K
Sbjct:  261 GGYEVILKAIEKLGLKHKEHIAAYGEGNERRLTGKHETANISTFKWGVANRGASVRVGRDTEKAGKGYFEDRRPASNMDPYVVTAMIADTTIIGK 355          
The following BLAST results are available for this feature:
BLAST of CX297754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA2_SOYBN1.529e-4590.63Glutamine synthetase cytosolic isozyme 2 OS=Glycin... [more]
GLNA1_PHAVU1.529e-4589.58Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE... [more]
GLN13_ORYSJ1.529e-4586.46Glutamine synthetase cytosolic isozyme 1-3 OS=Oryz... [more]
GLNA1_PEA2.608e-4590.63Glutamine synthetase nodule isozyme OS=Pisum sativ... [more]
GLN11_ORYSJ3.406e-4585.42Glutamine synthetase cytosolic isozyme 1-1 OS=Oryz... [more]
GLNA_LUPLU9.909e-4592.47Glutamine synthetase nodule isozyme OS=Lupinus lut... [more]
GLNA3_MAIZE2.207e-4486.46Glutamine synthetase root isozyme 3 OS=Zea mays GN... [more]
GLNA2_MAIZE2.207e-4486.46Glutamine synthetase root isozyme 2 OS=Zea mays GN... [more]
GLN13_ARATH2.883e-4492.47Glutamine synthetase cytosolic isozyme 1-3 OS=Arab... [more]
GLNA_NICPL1.096e-4387.37Glutamine synthetase OS=Nicotiana plumbaginifolia ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06004H05SK RindPdig24 Citrus clementina cDNA clone C06004H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297754 ID=CX297754; Name=CX297754; organism=Citrus clementina; type=EST; length=563bp
AGGGAGGCTTTGAGGTTATTAAGAAAGCAATTGAGAAACTTGGACTGAGG
CACAGTGAGCACATTGCCGCATATGGTGAAGGCAATGAACGCCGACTCAC
TGGCAAACATGAAACAGCTGACATCAACACTTTCAAATGGGGTGTTGCTA
ACCGTGGGGCATCAATCCGTGTTGGACGAGACACAGAGAAAGAAGGAAAG
GGTTACTTTGAGGACAGGAGACCTGCTTCTAACATGGATCCATATGTTGT
CACCTCCATGATTGCAGAAACCACTATTCTGTGGAAGCCATGAATGCTCC
TCTAGCAACCTTTGAAATATTTTGTTTGATCTGCTGGCTTTACTCAGGAT
TCACGAGTTCACGACAGAATTGTGTTCTGCTAAGGATGCTTTATTAGTAG
TAGTTCAGCTTTTGTCTTGTTTCAATCTCTGCCCCTGTATTTGCAACAGT
GGGTTCATTGCTTCCTGCTGTCCTATTGGGTTGAATAATGTAAACATTTA
ATTTAATAACATTATGGAAGGGTCAATTCCTTTTGTTCAAAAAAAAAAAA
AAAAAAAAAAAAA
back to top